spef1 (spef1)


Basic Information

Item Value
gene id spef1
gene name spef1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12929559 ~ 12937302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302606.1
GTTCAAACAACCCGACAGGTGCAGAGCTGAAGTGTGCGCAGTTAGACATATGTTTAGATTTTCAAAATCGAAAAAGTGTGTCTCATGATGAATAAGGAGCTAAATGAAGAAGCAATGCAAGACCTCTACGCTTGGATCGATCAAATCAAACTCTCCAGACCTAAAAGGAATATCTCACGCGACTTCAGTGATGGAGTTATGGCTGCTGAGGTTGTGAAGCACTTCTTCCCCAAGCTGGTGGagctacacaactacacacctGCACACTCCACTCAACAGAAACTGAGTAACTGGAACACGCTAAACAGGAAGGTTTTCTCCAAGCTGAATTTCCATGTACCAGCAGACACGTTAAAGAAGATCACACTCAGCACCCCGGGCAGCATTGAGCCAGTTCTGTGTGCTCtcagagagagattagaggacAAACAAGCAGGGAGAGTTTCAGATGGCATTCAGGATTTAGAATACTACAGCACTGTgaatgaaaaagcaaaaacagCAGAAAATGGCCAGAGCACTCTCCAGAACTCTCACAAGACAGCAGGTCCTGTGAAAAAGACCCAGAAATCTAATCCTCCTATAGTACTGGGTGAAAATGTAGACCCAGCTCTCCACTTGCTTTTGGAGGAGAAGGAGCAGGCTCTGTTGGCTTTACAGGAGACTGTAGAGattttacaaataaaagtgaacaGGCTGGAGCATCTGGTACATCTGAAGGACCTGCGCATTGAGGACCTGACCAAGCACTTGGAGAGGTACAAAGCCCGCACCAATATTCCATGAACACCAGTACCATGAACACAGTATGAAACCAAACAAGGGCTGAAGACTTTTAACCTTTGTCCTTTTTGTCCTTTAAGTCATCTTGTTTTCCTCACGCTATAATGCTATCACTGATAAGTGATGTGTATTCTGAATTTAgtaattttaatgaataatgcTGTAATAAGAATATTCAATGTGATCCTGAGCATTCTTAAATGTATCAGCATAATCGCACTGTACATACCTTGTgaaattattgtattttaacaggtttttatttgttttccttttttttttttttatcattgccATTCTGTGTTCTGTAGCTGCTTATTACTTATGTAATACTGTTTGGCAGTAGATTGTGACATCATCTTGTAAatcattatttatgaaatttgAATGTTTTGTTGAAATTTCTTTAAATTCCTCATTGCTTGTGTTCCTGATACTTAGTTTTGacctaaataaaacacagtagacagaaaatgttgaaaataagCAGTGCAACTCTCTTGTAAAT
>XR_004577802.1
GTTCAAACAACCCGACAGGTGCAGAGCTGAAGTGTGCGCAGTTAGACATATGTTTAGATTTTCAAAATCGAAAAAGTGTGTCTCATGATGAATAAGGAGCTAAATGAAGAAGCAATGCAAGACCTCTACGCTTGGATCGATCAAATCAAACTCTCCAGACCTAAAAGGAATATCTCACGCGACTTCAGTGATGGAGTTATGGCTGCTGAGGTTGTGAAGCACTTCTTCCCCAAGCTGGTGGagctacacaactacacacctGCACACTCCACTCAACAGAAACTGAGTAACTGGAACACGCTAAACAGGAAGGTTTTCTCCAAGCTGAATTTCCATGTACCAGCAGACACGTTAAAGAAGATCACACTCAGCACCCCGGGCAGCATTGAGCCAGTTCTGTGTGCTCtcagagagagattagaggacAAACAAGCAGGGAGAGTTTCAGATGGCATTCAGGATTTAGAATACTACAGCACTGTgaatgaaaaagcaaaaacagCAGAAAATGGCCAGAGCACTCTCCAGAACTCTCACAAGACAGCAGGTCCTGTGAAAAAGACCCAGAAATCTAATCCTCCTATAGTACTGGGTGAAAATGTAGACCCAGCTCTCCACTTGCTTTTGGAGGAGAAGGAGCAGGCTCTGTTGGCTTTACAGGAGACTGTAGAGttgtgtgtgagtccctcagttgtcctcagtgtgaaaagatggatctcaacatcatatagccgctGTTGGAACGGGGTCAAATATgtagaagatgctggaaaagccaaaaatgtgcaggacctggaggatgtttcttaagaacagtgggcagtataactgctcaggacaaacaagagactcatgaacaaccatcacaaaatataaaaacagtcgctgatcatccagattttacaaataaaagtgaacaGGCTGGAGCATCTGGTACATCTGAAGGACCTGCGCATTGAGGACCTGACCAAGCACTTGGAGAGGTACAAAGCCCGCACCAATATTCCATGAACACC
>XR_004577803.1
GTTCAAACAACCCGACAGGTGCAGAGCTGAAGTGTGCGCAGTTAGACATATGTTTAGATTTTCAAAATCGAAAAAGTGTGTCTCATGATGAATAAGGAGCTAAATGAAGAAGCAATGCAAGACCTCTACGCTTGGATCGATCAAATCAAACTCTCCAGACCTAAAAGGAATATCTCACGCGACTTCAGTGATGGAGTTATGGCTGCTGAGGTTGTGAAGCACTTCTTCCCCAAGCTGGTGGagctacacaactacacacctGCACACTCCACTCAACAGAAACTGAGTAACTGGAACACGCTAAACAGGAAGGTTTTCTCCAAGCTGAATTTCCATGTACCAGCAGACACGTTAAAGAAGATCACACTCAGCACCCCGGGCAGCATTGAGCCAGTTCTGTGTGCTCtcagagagagattagaggacAAACAAGCAGGGAGAGTTTCAGATGGCATTCAGGATTTAGAATACTACAGCACTGTgaatgaaaaagcaaaaacagAAAATGGCCAGAGCACTCTCCAGAACTCTCACAAGACAGCAGGTCCTGTGAAAAAGACCCAGAAATCTAATCCTCCTATAGTACTGGGTGAAAATGTAGACCCAGCTCTCCACTTGCTTTTGGAGGAGAAGGAGCAGGCTCTGTTGGCTTTACAGGAGACTGTAGAGttgtgtgtgagtccctcagttgtcctcagtgtgaaaagatggatctcaacatcatatagccgctGTTGGAACGGGGTCAAATATgtagaagatgctggaaaagccaaaaatgtgcaggacctggaggatgtttcttaagaacagtgggcagtataactgctcaggacaaacaagagactcatgaacaaccatcacaaaatataaaaacagtcgctgatcatccagattttacaaataaaagtgaacaGGCTGGAGCATCTGGTACATCTGAAGGACCTGCGCATTGAGGACCTGACCAAGCACTTGGAGAGGTACAAAGCCCGCACCAATATTCCATGAACACC

Function

symbol description
spef1 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme.

NR:

description
sperm flagellar protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302606.1 True 1291 mRNA 0.40 7 12929559 12937302
XR_004577802.1 False 1016 misc_RNA 0.45 8 12929559 12936802
XR_004577803.1 False 1013 misc_RNA 0.45 8 12929559 12936802

Neighbor

gene id symbol gene type direction distance location
adam8a adam8 coding upstream 505 12920496 ~ 12929054 (+)
msx3 msx3,LOC108263347 coding upstream 17945 12909723 ~ 12911614 (+)
fuom fuom,LOC107676595 coding upstream 54574 12871072 ~ 12874985 (+)
echs1 echs1,LOC107601864,LOC107743519,LOC107676592,LOC107666378 coding upstream 61107 12863910 ~ 12868452 (+)
lgalslb lgalsl,LOC107601863,LOC107666541,LOC107676594,LOC107552938 coding upstream 67591 12855001 ~ 12861968 (+)
cfap43 cfap43 coding downstream 19854 12957156 ~ 12981378 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding downstream 97358 13034660 ~ 13039337 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding downstream 102905 13040207 ~ 13055375 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding downstream 292360 13229662 ~ 13236979 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding downstream 357930 13295232 ~ 13310269 (+)
G45376 NA non-coding upstream 59336 12870003 ~ 12870223 (+)
G45360 NA non-coding upstream 108170 12820856 ~ 12821389 (+)
G45351 NA non-coding upstream 118309 12810919 ~ 12811250 (+)
LOC117596851 NA non-coding upstream 190333 12733432 ~ 12739226 (+)
G45170 NA non-coding upstream 254936 12674408 ~ 12674623 (+)
G45453 NA non-coding downstream 22788 12960090 ~ 13031136 (+)
G45459 NA non-coding downstream 74644 13011946 ~ 13017600 (+)
G45473 NA non-coding downstream 114938 13052240 ~ 13052529 (+)
G45508 NA non-coding downstream 158369 13095671 ~ 13095881 (+)
G45592 NA non-coding downstream 374375 13311677 ~ 13312080 (+)
LOC117596823 NA other upstream 286255 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 293153 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 1163145 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 1184335 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 1222554 11706935 ~ 11707005 (+)
col17a1b LOC108263226,LOC108426809 other downstream 45104 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 94748 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 560746 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1276067 14213369 ~ 14286542 (+)
cgas NA other downstream 1424065 14361367 ~ 14368100 (+)

Expression


Co-expression Network