gphb5 (gphb5)


Basic Information

Item Value
gene id gphb5
gene name gphb5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31996509 ~ 32006650 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302701.1
ATGTCTATAGAGAAGCACGCCATCATTAACCTCTTAGAAATTCAAATGTGTACACAAGTTTGTGCTTTACATCTCAAATCATGCAGCGAAATTAACACCACatgctccctctctctgtgtgtgtatgtgtgtgtctgtgtgtgtgtttacaggctcTCTGCCACATCTCTAAGCTGTGCcgtggtgtgtgttttgttgtgtttttctctcccGAGTCATGGCTCTGCACTGGAACTCCAGCGTTTTATAGGCTGTGCTGTCAGAGAGTTCACCTTCATAGCCCAGAAGCCAGGATGTGGGAAACTGCAGATCACCACCGACGCCTGCTGGGGGCGCTGTGAGACCTGGgagAAACCAATCCTGGACCCGCCCTTCATCGAGTCCCGTCAGCAAGTGTGCACTTACAACCAGACCCAATTCATCACCGTGCAGCTGCCCAACTGCTCAGCCGGCGTGGATCCGTACTACACCTACCCCGTGGCCCGGAGGtgtgagtgtggagtgtgtgtgaccAGCACCACAGAGTGTATCACCTCCATCTGA

Function

symbol description
gphb5 Predicted to contribute to hormone activity. Predicted to be involved in G protein-coupled receptor signaling pathway and regulation of thyroid hormone mediated signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Orthologous to human GPHB5 (glycoprotein hormone subunit beta 5).

NR:

description
PREDICTED: glycoprotein hormone beta-5

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302701.1 True 543 mRNA 0.52 3 31996509 32006650

Neighbor

gene id symbol gene type direction distance location
slc30a10 LOC108263333 coding downstream 376178 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 471609 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 970664 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 990047 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 1241033 30755406 ~ 30755476 (-)
esr2b esr2 coding upstream 124797 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 185200 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 308808 32315458 ~ 32331216 (-)
iqcc NA coding upstream 324743 32331393 ~ 32336477 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 332584 32339234 ~ 32345727 (-)
G56305 NA non-coding downstream 62919 31859807 ~ 31933590 (-)
G56315 NA non-coding downstream 150314 31845037 ~ 31846195 (-)
G56271 NA non-coding downstream 169375 31817253 ~ 31827134 (-)
G56279 NA non-coding downstream 266397 31728773 ~ 31730112 (-)
LOC117596876 NA non-coding downstream 320558 31657051 ~ 31675951 (-)
G56614 NA non-coding upstream 64113 32070763 ~ 32072498 (-)
G56675 NA non-coding upstream 200839 32207489 ~ 32208007 (-)
G56693 NA non-coding upstream 237273 32243923 ~ 32244290 (-)
G56670 NA non-coding upstream 293656 32300306 ~ 32309955 (-)
G56661 oip5 non-coding upstream 374477 32381127 ~ 32381831 (-)
G56303 NA other downstream 158274 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 165577 31678383 ~ 31830932 (-)
G56272 NA other downstream 167025 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 395824 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 447876 31545901 ~ 31548633 (-)
brf1a brf1 other upstream 232951 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 340105 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 367686 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 647186 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 709177 32715827 ~ 32728741 (-)

Expression


Co-expression Network