dennd10 (fam45a,LOC106576813,LOC106604714,LOC107711433)


Basic Information

Item Value
gene id dennd10
gene name fam45a,LOC106576813,LOC106604714,LOC107711433
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10856138 ~ 10862110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302753.1
GTATCATCCCTAGATAAGTGCCCTACTTAGGGTGTGATAGAATTGCTTTTACAACatatctagtgcactatatgttaAATAAGGACGCATTTGAGATTCTACCACAGATTTCAGTACAAATTGCACTATTTTGGTACCGTtagtgggtgtttatggtgaaAGATACACAATATTTTTTTCAGCTGGCTGAGTTTTCCCCTCGCTGAGGCGCTGAGACGCGGACAGGACCCCGGACAGGACCCCGGACATGGCAGTGTCTGAGACTGAGCTGATGTTGAGCGTCGGATTGATCGAGAAGGACGTGAACGCGGACACGCTGTGGGTTTGGTGTTTCCCAGCAGTCAGCGCCGAGCTGCGTGAGGTCTTGATGCGGAAGTGCTGTTTGTCCCGCGACTCTGCGGAGCTGCACGCCTTCGTGTTCGGTCAGTACCGCCGGAGCTGGTACTACCTCACCACCGCCGAGGTCCAGGAGCCCACCGCCCTCAGCAAGGTTACGCATTTCACTATAGTTATTACAGCGAAGGATTTCAACCCTGAAAAGTATGCTGCATTCAGTCGAGTTCTGTGTAGGATTTACATGAAGCATGGCAGTCCAGTGAAGATGATGGAAGGCTACATTGCTGTCCTAACAAAGGGCATCTGTCAAAGCGATGAGAACGGCTCCTTCCTCATCAAGGACTATGATGTTAGAAAAGCCTTTTTGGCTGGATCCATTAAAGATGTGGTGTCTCAGTTTGGAATGGAGACCATCATCCTGTACACAGCACTGATGCTGAAGAAAAGGATTGTGATCTACCATCCTCGCGTCGAGGCTCTGCTCGAGTTCTCAAGAGCTCTTCCAGCCCTGACATGGCATAGGAAAGATTGGTCCATTCTCCACCCATATGTTCATCTGGAGGACAGAGAGTTGGACAACCTCAGATCATGTTCAGGGTATGTTGCAGGCTTTGTGGATCCCGAGGTTATCAACAGATCGGATCTCTTCGATGTTTTCGTTAATCTTCCAGACAATGAGATCACCATAGCTCAACATGCAAAAGAGGCTATGGCTATGGGAAAACTGCATAAGGAGATCGGCCACTTGATTGTCCAGTCTGCAGAGGACGCTGATCGCACAGACATTCAAGTTATCAAGGATATCTCTGTGAAGACTAAGGAGATCCTTAGTAACTTGGTGTCCCTTGCTGAGGAAGGGGACGACGCAAAGCTGACGCTGGACACACTGAAGCGACGTCACCTTCCTCCAGCAACCGAGAACTTCCTCTTCCACTTAGCTGGAGCTGAGCAGCTCCTGAAGATCTAAATAATCCCCCATGAACCTAGGAGAGCCTAACGAAGAAAATCACTATGTGATCGTATGATTTATAAATGCGTGTAAATGCAAAGATGAATTTACAAAAAGAGTTTTATAGAAATTTTATGATGTTCTAGACACATTCAGTGACCAAAACTATTATGTATATTACTCTTTAGCTACCCTTTCTTTTCCAGAAGAGTCTTCTTAGGAAGCACTTACAATTACTTGACGAATATACAGGTGTGGATGGATAATGTACTTTTAcatttgtacacatttttaaGGTGGCACTTTGAACTTGAACACAGTCTAAATGGAGAGTATTTTGTGGTAGTGCTTTATTAAATAGTTTTGAAAATTTAGATAATGAAGATTTTTAtgccaaaataaatataatcctGATTAATATCAAAGTACAGAACACTATTTTGCTGCCACTGAAATCTTATTTGGTTGTGATTGAGTTGCATCaagtgtttttgtgtatgtctgtgtgtttcaaaaaaaaaaatgtaccagAAAGCTAATAGCACTAGTTTAAGATAAAACAGGAAAAGCACAAATGAGTTTCGAACGCATACCCAACaggtttcatttgtttcttgcAATCTTGACAAgctccatcttcttcttctacatgttttgatttttttttctttgccctACATCAGTTACTTAGTCATCATCTGCCTGAAGGAGTGCTTGTGCCAAAAAATATTCCATATGCACTTTTCATATATGTTCACatgtaatgttttcttaaatGATGCTGTTGTCCGTTCTAACAGTTGTATATGCCTGATTTCTAATGACATAAAAATTAAAGCTCAGTGTAAAGTTCTTTTAAATTATGTCAATGTGAACTTAACAATGATATAACAAtagcaatattttgttaaatccATTCTGTCTAAAACgctattaaattaaaacatgacTCTGTTCCA
>XM_034302754.1
CTTGATGCGGAAGTGCTGTTTGTCCCGCGACTCTGCGGAGCTGCACGCCTTCGTGTTCGGTCAGTACCGCCGGAGCTGGTACTACCTCACCACCGCCGAGGTCCAGGAGCCCACCGCCCTCAGCAAGGTATCCAGCTCAGTGGAGGGCATACTGCTAGGAGGAACACGAAAATATCACAGTAAATAAGGTTACGCATTTCACTATAGTTATTACAGCGAAGGATTTCAACCCTGAAAAGTATGCTGCATTCAGTCGAGTTCTGTGTAGGATTTACATGAAGCATGGCAGTCCAGTGAAGATGATGGAAGGCTACATTGCTGTCCTAACAAAGGGCATCTGTCAAAGCGATGAGAACGGCTCCTTCCTCATCAAGGACTATGATGTTAGAAAAGCCTTTTTGGCTGGATCCATTAAAGATGTGGTGTCTCAGTTTGGAATGGAGACCATCATCCTGTACACAGCACTGATGCTGAAGAAAAGGATTGTGATCTACCATCCTCGCGTCGAGGCTCTGCTCGAGTTCTCAAGAGCTCTTCCAGCCCTGACATGGCATAGGAAAGATTGGTCCATTCTCCACCCATATGTTCATCTGGAGGACAGAGAGTTGGACAACCTCAGATCATGTTCAGGGTATGTTGCAGGCTTTGTGGATCCCGAGGTTATCAACAGATCGGATCTCTTCGATGTTTTCGTTAATCTTCCAGACAATGAGATCACCATAGCTCAACATGCAAAAGAGGCTATGGCTATGGGAAAACTGCATAAGGAGATCGGCCACTTGATTGTCCAGTCTGCAGAGGACGCTGATCGCACAGACATTCAAGTTATCAAGGATATCTCTGTGAAGACTAAGGAGATCCTTAGTAACTTGGTGTCCCTTGCTGAGGAAGGGGACGACGCAAAGCTGACGCTGGACACACTGAAGCGACGTCACCTTCCTCCAGCAACCGAGAACTTCCTCTTCCACTTAGCTGGAGCTGAGCAGCTCCTGAAGATCTAAATAATCCCCCATGAACCTAGGAGAGCCTAACGAAGAAAATCACTATGTGATCGTATGATTTATAAATGCGTGTAAATGCAAAGATGAATTTACAAAAAGAGTTTTATAGAAATTTTATGATGTTCTAGACACATTCAGTGACCAAAACTATTATGTATATTACTCTTTAGCTACCCTTTCTTTTCCAGAAGAGTCTTCTTAGGAAGCACTTACAATTACTTGACGAATATACAGGTGTGGATGGATAATGTACTTTTAcatttgtacacatttttaaGGTGGCACTTTGAACTTGAACACAGTCTAAATGGAGAGTATTTTGTGGTAGTGCTTTATTAAATAGTTTTGAAAATTTAGATAATGAAGATTTTTAtgccaaaataaatataatcctGATTAATATCAAAGTACAGAACACTATTTTGCTGCCACTGAAATCTTATTTGGTTGTGATTGAGTTGCATCaagtgtttttgtgtatgtctgtgtgtttcaaaaaaaaaaatgtaccagAAAGCTAATAGCACTAGTTTAAGATAAAACAGGAAAAGCACAAATGAGTTTCGAACGCATACCCAACaggtttcatttgtttcttgcAATCTTGACAAgctccatcttcttcttctacatgttttgatttttttttctttgccctACATCAGTTACTTAGTCATCATCTGCCTGAAGGAGTGCTTGTGCCAAAAAATATTCCATATGCACTTTTCATATATGTTCACatgtaatgttttcttaaatGATGCTGTTGTCCGTTCTAACAGTTGTATATGCCTGATTTCTAATGACATAAAAATTAAAGCTCAGTGTAAAGTTCTTTTAAATTATGTCAATGTGAACTTAACAATGATATAACAAtagcaatattttgttaaatccATTCTGTCTAAAACgctattaaattaaaacatgacTCTGTTCCA

Function

NR:

description
PREDICTED: protein FAM45A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302753.1 True 2244 mRNA 0.42 10 10856138 10862110
XM_034302754.1 False 1942 mRNA 0.40 8 10856138 10861414

Neighbor

gene id symbol gene type direction distance location
prdx3 prdx3,LOC107733724,LOC107666469 coding downstream 6425 10845031 ~ 10849713 (-)
polr1b polr1b coding downstream 59043 10785741 ~ 10797095 (-)
LOC113545523 cyp1b coding downstream 120241 10731531 ~ 10735897 (-)
cdc42ep3 cdc42ep3 coding downstream 196897 10650453 ~ 10659241 (-)
opn3 opn3,LOC107676370 coding downstream 240515 10607859 ~ 10615623 (-)
march5 march5,LOC107719203 coding upstream 32241 10894351 ~ 10927228 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding upstream 120484 10982594 ~ 11010366 (-)
ccnj ccnj,LOC107562385 coding upstream 175859 11037969 ~ 11041301 (-)
blnk LOC108263522 coding upstream 192658 11054768 ~ 11094954 (-)
vent NA coding upstream 460610 11322720 ~ 11324343 (-)
G44173 NA non-coding downstream 38846 10816672 ~ 10817292 (-)
G44105 NA non-coding downstream 132470 10673346 ~ 10723668 (-)
G44103 NA non-coding downstream 200294 10653714 ~ 10655844 (-)
G43987 NA non-coding downstream 539690 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 551056 10291067 ~ 10305082 (-)
G44262 NA non-coding upstream 60199 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 91395 10953505 ~ 10956492 (-)
G44274 NA non-coding upstream 112709 10974819 ~ 10978423 (-)
G44275 NA non-coding upstream 116536 10978646 ~ 10980295 (-)
G44582 NA non-coding upstream 525096 11387206 ~ 11387946 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 694615 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 847577 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1627254 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2002344 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2072340 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 846504 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1148821 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1282730 12144840 ~ 12152522 (-)
nin nin other upstream 1572999 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1662526 12524636 ~ 12534215 (-)

Expression


Co-expression Network