tacc3 (tacc3,LOC108440911)


Basic Information

Item Value
gene id tacc3
gene name tacc3,LOC108440911
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33507094 ~ 33516686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302763.1
cctcaaaacacacacagacccacagggagcgagagagagagagaagggcgCGCGAGCTCGCCATCGTGACACGTTTTTCGTTTTTTGGAACCGAAAGAAAAgcgaaaataaaacatatttctgaTCTAAACTGAGTATGAGCTCAGAGGTGGTGAACGATGAGAATCAGGGCGCTCTGCCCGCACGCAAGCGCGTCCTGTCCGAGTCTGCCGCCGATATTTTCGCTCTGGATCAGCCCACCGGCAGGCCGTCCATCCTGAGGCAGTCTCAGGCCGAGAACGTTAATAAAAACATCCCTAAAGGAGTGAAGGTGTGTTTCCAGACTCCGCTCAGAGACCCGGTGACGAGGAAGATCATGTCCCCGAGTCGCGTGGGCAAAATGGCCGCCCTCGATGACTGCACTAACGCTCTGGAGTCTCTCACGCTGAAGTCGCCCATTCCGGTCGACGTTCCCGCTAAAACGGCCACTTCCCTTCCTGACGATGACATGCCCATTCAGAGCCGAGGAGGCTACGCCATCGACTTCGACAACCTGGACTCCATCAATCCCTTCCAGAGCTGCAGTAAAATGATCCTCTCTCCACTCAAACCTGCCGCTCTGCTGTCGGACTCCCTGTCCCTGACGGAGCCGGCTCCGCCCGCCCCATCGCCCGCTCCCGAAGAGGCGGAAAAGCTTCCGGAAAAGGCCGACATGGCTCTGGATGAGACTCTCCCTTTTATCCCGTCTGTAGAGAATTCCCTGGCGGACTTATCCGCGGACGGCGCCTCCACAGACAGCACGGTGATCATCGAGCCGAGGAAAACTGCGCCCGCGGATCACGGCGCCGACGATACGGTGAACGTCGAAGTTCCCGAGCCAGCTCCTGTAGTTCACGAAGACGTCACGGATTCGCTTTTACTCCCTAAAGGATCCTACAGCATTGATTTTGATAACCTTGACTCGGTGAATCCTTTCAGTGCCGGTGGCTCAAAAATCCAGAACTCTCCCCCCGTCTCCAGGAAATCGCCCGTCCGCAATCCAGCGCCGCCTCAAGCTGAGGAGACGAGCTCAGGCGTGAAGACACCTAGCGAACGAGAAGATAACCTCTGCACCATGGAGAAGCCCAGCCTTACAGAGGCGAACGCCGACACCGCTCTCGCCTCAGCAGCGCCACCTACAGAGGCTCCCGTGGTGCTGGAGTTCAACTTTGACGACGGCGCCGAAGTAAAACGCAAACCTCCTCCCAAACGCCTCGGCTTAAAAAAGCCTCCGCTTTCCAAAACGAAACCCGACGCCACAAAACCAGCGTCTGCGTCCGCTCCAGCCGAGAAGAAAAGTCCGAAATCAAACCCGAGTCATGCGACACGGCGGCGGAGATTCCTCCAGCGAGAGGCGCTTACACTGTTGACTTTGATCAATTCGATGATCCAAACTTTAATCCGTTCGGTACGAAGGCAAAAATGGGTGGATCTCCTCCTCGCGGCGCTCCGGTGGCGAGCGAGGTCTCTACGAGTCCAGCGCAGAACCAGGAGAACCCGGAAAACGCTGTggagaaccacacacacagTTCTCCTTCCTCTGAACCCGAAAAGCCTGCAGAAGCTGAACCATCTTTCACTAAGGAAGCAGAAGAACCCGAGCCCTTACTGTTTGCCGAAACCCACCAGCCCCCCGCTCCGGTTATTCCACAGCCACAAAAGACGGAGGAGTCGGCTTTCCCCTGCGCTCCGATCCACAGTCGCGGAGTTTGATGCGGCTGCAGCCGATGACGAGTTTGTTCCCGGCTCCATGTTCATGCCGAGTGACCTGGATGGACAGATCGATTATCTGGAGCAGTTTGGATCCAGCACTtttaagGAATCGGCTCTGCGTAAGCAGTCCCTCTATCTGAAGTTCGACCCTCTGCTGAAGGAAAGCCCGAAGAAAGCCACAGTGGACAGCTCGAGCTTCGGGTTCAGTCTGCCTCGTCCCTCTTTGGCCATCCGgatgATGGAGGCTGcgaggtcagaggtcaagcaGAAATCTCAGCAGGAAAGCACAAAGCTGCTGGAGGACTTTCCTCCAccggcggaGCGTCCGGTGGTTCAGGACCCCGCCGTGCTGGACCTGCTGGTGCCGACGCTGAAGCAGACGCAGAGGAGCGAGGACGTCATCGTGGACATGCTGAAGTACACGCAGAAAGACCTGGATGCCGCTCTGGAAAAGACCCGGAAACAGGCAGAGGAGAAGGAGGTGGACCTGAAGGCCCAGATTGAGAAGATGACTCTGGATAATCAGCACATATGGTGCTGATCGTGTCGGAGTTCGAGGCCGTTATTGCTCAGATCACAGCCGAGCACAAGCAGAAGGACGAGCTGGCGCAGGCCGAGCTCAGCAGAGTGCTTCAGGAGAAGCAGCAGCTGGCTAAAGAGCTGAGCGACATGGAGCGCTCCTTCTCCGACGTCGTCAAGCACCTGG
>XM_034302764.1
cctcaaaacacacacagacccacagggagcgagagagagagagaagggcgCGCGAGCTCGCCATCGTGACACGTTTTTCGTTTTTTGGAACCGAAAGAAAAgcgaaaataaaacatatttctgaTCTAAACTGAGTATGAGCTCAGAGGTGGTGAACGATGAGAATCAGGGCGCTCTGCCCGCACGCAAGCGCGTCCTGTCCGAGTCTGCCGCCGATATTTTCGCTCTGGATCAGCCCACCGGCAGGCCGTCCATCCTGAGGCAGTCTCAGGCCGAGAACGTTAATAAAAACATCCCTAAAGGAGTGAAGGTGTGTTTCCAGACTCCGCTCAGAGACCCGGTGACGAGGAAGATCATGTCCCCGAGTCGCGTGGGCAAAATGGCCGCCCTCGATGACTGCACTAACGCTCTGGAGTCTCTCACGCTGAAGTCGCCCATTCCGGTCGACGTTCCCGCTAAAACGGCCACTTCCCTTCCTGACGATGACATGCCCATTCAGAGCCGAGGAGGCTACGCCATCGACTTCGACAACCTGGACTCCATCAATCCCTTCCAGAGCTGCAGTAAAATGATCCTCTCTCCACTCAAACCTGCCGCTCTGCTGTCGGACTCCCTGTCCCTGACGGAGCCGGCTCCGCCCGCCCCATCGCCCGCTCCCGAAGAGGCGGAAAAGCTTCCGGAAAAGGCCGACATGGCTCTGGATGAGACTCTCCCTTTTATCCCGTCTGTAGAGAATTCCCTGGCGGACTTATCCGCGGACGGCGCCTCCACAGACAGCACGGTGATCATCGAGCCGAGGAAAACTGCGCCCGCGGATCACGGCGCCGACGATACGGTGAACGTCGAAGTTCCCGAGCCAGCTCCTGTAGTTCACGAAGACGTCACGGATTCGCTTTTACTCCCTAAAGGATCCTACAGCATTGATTTTGATAACCTTGACTCGGTGAATCCTTTCAGTGCCGGTGGCTCAAAAATCCAGAACTCTCCCCCCGTCTCCAGGAAATCGCCCGTCCGCAATCCAGCGCCGCCTCAAGCTGAGGAGACGAGCTCAGGCGTGAAGACACCTAGCGAACGAGAAGATAACCTCTGCACCATGGAGAAGCCCAGCCTTACAGAGGCGAACGCCGACACCGCTCTCGCCTCAGCAGCGCCACCTACAGAGGCTCCCGTGGTGCTGGAGTTCAACTTTGACGACGGCGCCGAAGTAAAACGCAAACCTCCTCCCAAACGCCTCGGCTTAAAAAAGCCTCCGCTTTCCAAAACGAAACCCGACGCCACAAAACCAGCGTCTGCGTCCGCTCCAGCCGAGAAGAAAAGTCCGAAATCAAACCCGAGTCATGCGACACGGCGGCGGAGATTCCTCCAGCGAGAGGCGCTTACACTGTTGACTTTGATCAATTCGATGATCCAAACTTTAATCCGTTCGGTACGAAGGCAAAAATGGGTGGATCTCCTCCTCGCGGCGCTCCGGTGGCGAGCGAGGTCTCTACGAGTCCAGCGCAGAACCAGGAGAACCCGGAAAACGCTGTggagaaccacacacacagTTCTCCTTCCTCTGAACCCGAAAAGCCTGCAGAAGCTGAACCATCTTTCACTAAGGAAGCAGAAGAACCCGAGCCCTTACTGTTTGCCGAAACCCACCAGCCCCCCGCTCCGGTTATTCCACAGCCACAAAAGACGGAGGAGTCGGCTTTCCCCTGCGCTCCGATCCACAGTCGCGGAGTTTGATGCGGCTGCAGCCGATGACGAGTTTGTTCCCGGCTCCATGTTCATGCCGAGTGACCTGGATGGACAGATCGATTATCTGGAGCAGTTTGGATCCAGCACTtttaagGAATCGGCTCTGCGTAAGCAGTCCCTCTATCTGAAGTTCGACCCTCTGCTGAAGGAAAGCCCGAAGAAAGCCACAGTGGACAGCTCGAGCTTCGGGTTCAGTCTGCCTCGTCCCTCTTTGGCCATCCGgatgATGGAGGCTGcgaggtcagaggtcaagcaGAAATCTCAGCAGGAAAGCACAAAGCTGCTGGAGGACTTTCCTCCAccgGACCCCGCCGTGCTGGACCTGCTGGTGCCGACGCTGAAGCAGACGCAGAGGAGCGAGGACGTCATCGTGGACATGCTGAAGTACACGCAGAAAGACCTGGATGCCGCTCTGGAAAAGACCCGGAAACAGGCAGAGGAGAAGGAGGTGGACCTGAAGGCCCAGATTGAGAAGATGACTCTGGATAATCAGCACATATGGTGCTGATCGTGTCGGAGTTCGAGGCCGTTATTGCTCAGATCACAGCCGAGCACAAGCAGAAGGACGAGCTGGCGCAGGCCGAGCTCAGCAGAGTGCTTCAGGAGAAGCAGCAGCTGGCTAAAGAGCTGAGCGACATGGAGCGCTCCTTCTCCGACGTCGTCAAGCACCTGG
>XM_034302765.1
cctcaaaacacacacagacccacagggagcgagagagagagagaagggcgCGCGAGCTCGCCATCGTGACACGTTTTTCGTTTTTTGGAACCGAAAGAAAAgcgaaaataaaacatatttctgaTCTAAACTGAGTATGAGCTCAGAGGTGGTGAACGATGAGAATCAGGGCGCTCTGCCCGCACGCAAGCGCGTCCTGTCCGAGTCTGCCGCCGATATTTTCGCTCTGGATCAGCCCACCGGCAGGCCGTCCATCCTGAGGCAGTCTCAGGCCGAGAACGTTAATAAAAACATCCCTAAAGGAGTGAAGGTGTGTTTCCAGACTCCGCTCAGAGACCCGGTGACGAGGAAGATCATGTCCCCGAGTCGCGTGGGCAAAATGGCCGCCCTCGATGACTGCACTAACGCTCTGGAGTCTCTCACGCTGAAGTCGCCCATTCCGGTCGACGTTCCCGCTAAAACGGCCACTTCCCTTCCTGACGATGACATGCCCATTCAGAGCCGAGGAGGCTACGCCATCGACTTCGACAACCTGGACTCCATCAATCCCTTCCAGAGCTGCAGTAAAATGATCCTCTCTCCACTCAAACCTGCCGCTCTGCTGTCGGACTCCCTGTCCCTGACGGAGCCGGCTCCGCCCGCCCCATCGCCCGCTCCCGAAGAGGCGGAAAAGCTTCCGGAAAAGGCCGACATGGCTCTGGATGAGACTCTCCCTTTTATCCCGTCTGTAGAGAATTCCCTGGCGGACTTATCCGCGGACGGCGCCTCCACAGACAGCACGGTGATCATCGAGCCGAGGAAAACTGCGCCCGCGGATCACGGCGCCGACGATACGGTGAACGTCGAAGTTCCCGAGCCAGCTCCTGTAGTTCACGAAGACGTCACGGATTCGCTTTTACTCCCTAAAGGATCCTACAGCATTGATTTTGATAACCTTGACTCGGTGAATCCTTTCAGTGCCGGTGGCTCAAAAATCCAGAACTCTCCCCCCGTCTCCAGGAAATCGCCCGTCCGCAATCCAGCGCCGCCTCAAGCTGAGGAGACGAGCTCAGGCGTGAAGACACCTAGCGAACGAGAAGATAACCTCTGCACCATGGAGAAGCCCAGCCTTACAGAGGCGAACGCCGACACCGCTCTCGCCTCAGCAGCGCCACCTACAGAGGCTCCCGTGGTGCTGGAGTTCAACTTTGACGACGGCGCCGAAGTAAAACGCAAACCTCCTCCCAAACGCCTCGGCTTAAAAAAGCCTCCGCTTTCCAAAACGAAACCCGACGCCACAAAACCAGCGTCTGCGTCCGCTCCAGCCGAGAAGAAAAGTCCGAAATCAAACCCGAGTCATGCGACACGGCGGCGGAGATTCCTCCAGCGAGAGGCGCTTACACTGTTGACTTTGATCAATTCGATGATCCAAACTTTAATCCGTTCGGTACGAAGGCAAAAATGGGTGGATCTCCTCCTCGCGGCGCTCCGGTGGCGAGCGAGGTCTCTACGAGTCCAGCGCAGAACCAGGAGAACCCGGAAAACGCTGTggagaaccacacacacagTTCTCCTTCCTCTGAACCCGAAAAGCCTGCAGAAGCTGAACCATCTTTCACTAAGGAAGCAGAAGAACCCGAGCCCTTACTGTTTGCCGAAACCCACCAGCCCCCCGCTCCGGTTATTCCACAGCCACAAAAGACGGAGGAGTCGGCTTTCCCCTGCGCTCCGATCCACAGTCGCGGAGTTTGATGCGGCTGCAGCCGATGACGAGTTTGTTCCCGGCTCCATGTTCATGCCGAGTGACCTGGATGGACAGATCGATTATCTGGAGCAGTTTGGATCCAGCACTtttaagGAATCGGCTCTGCGTAAGCAGTCCCTCTATCTGAAGTTCGACCCTCTGCTGAAGGAAAGCCCGAAGAAAGCCACAGTGGACAGCTCGAGCTTCGGGTTCAGTCTGCCTCGTCCCTCTTTGGCCATCCGgatgATGGAGGCTGcgaggtcagaggtcaagcaGAAATCTCAGCAGGAAAGCACAAAGCTGCTGGAGGACTTTCCTCCAccggcggaGCGTCCGGTGGTTCAGGACCCCGCCGTGCTGGACCTGCTGGTGCCGACGCTGAAGCAGACGCAGAGGAGCGAGGACGTCATCGTGGACATGCTGAAGTACACGCAGAAAGACCTGGATGCCGCTCTGGAAAAGACCCGGAAACAGGCAGAGGAGAAGGAGGTGGACCTGAAGGCCCAGATTGAGAAGATGACTCTGGATAATCAGCACATATGGCTGATCGTGTCGGAGTTCGAGGCCGTTATTGCTCAGATCACAGCCGAGCACAAGCAGAAGGACGAGCTGGCGCAGGCCGAGCTCAGCAGAGTGCTTCAGGAGAAGCAGCAGCTGGCTAAAGAGCTGAGCGACATGGAGCGCTCCTTCTCCGACGTCGTCAAGCACCTGGACCGACGCAAGGAAGTCATCGATGGCTTCAAGAAGaacgaGGAGACGCTGAAGCAGTGCGCTCAGAGCTACTTGGCCAGACTGCAGAAGGAGGAACAGCGTTATCAGATGCTCAAAACTCACGCCGAGGAGAAAATCGACCAggcGAATAAGCAGATAGCGGAGGTGCGCTCTAAGCTGGGAGCGGAGGTTTCTGCTCTTCAGGTGCAGCTCAGGAGAGAGCAGCTCAAAGTGCAGTCGCTGGAGAAGAACCTGGAGCAGAAGacGAAGGAGGTGGAGGACGTCACCAAGCTGTGTGATGAGCTGATCGCGAAAGTACAGCAGCACTGAGCTGCTGCTTTATtcatgtctgtctctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttattgTTGTTCATCTTGTACTGATTGAATAGAAAAAAGACTTTTACTGTGTAACACTGACTTCTTTCAGTGAAAGGTTTAAATAAAGAGCTTCTTCTGCATTAAACAACAA

Function

symbol description
tacc3 Predicted to be involved in cell population proliferation and microtubule cytoskeleton organization. Predicted to act upstream of or within mitotic spindle organization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; pectoral fin musculature; pharynx; proliferative region; and retina. Orthologous to human TACC3 (transforming acidic coiled-coil containing protein 3).

NR:

description
PREDICTED: transforming acidic coiled-coil-containing protein 3

GO: NA

KEGG:

id description
K14283 TACC3, maskin; transforming acidic coiled-coil-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302763.1 False 2437 mRNA 0.57 13 33508971 33516686
XM_034302764.1 False 2416 mRNA 0.57 13 33508971 33516686
XM_034302765.1 True 2944 mRNA 0.55 16 33507094 33516686

Neighbor

gene id symbol gene type direction distance location
kif15 kif15 coding downstream 1769 33485013 ~ 33505325 (-)
tdrd9 tdrd9,LOC104966444 coding downstream 23012 33468023 ~ 33484082 (-)
six4a NA coding downstream 103370 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 119275 33385114 ~ 33387819 (-)
dhrs7 dhrs7 coding downstream 145229 33357030 ~ 33361865 (-)
LOC113541868 NA coding upstream 71207 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 93771 33610457 ~ 33644218 (-)
lgmn lgmn,LOC100304954 coding upstream 129072 33645758 ~ 33656870 (-)
pcnx1 pcnx1,LOC108262680 coding upstream 147128 33663814 ~ 33692927 (-)
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding upstream 177515 33694201 ~ 33698292 (-)
G57220 NA non-coding downstream 39787 33465699 ~ 33467307 (-)
G57317 NA non-coding downstream 84620 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 95641 33410548 ~ 33411453 (-)
G57232 NA non-coding downstream 100968 33370775 ~ 33406126 (-)
G57224 NA non-coding downstream 131593 33369860 ~ 33375501 (-)
G57335 NA non-coding upstream 18792 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 54724 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 58600 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 140308 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 184534 33701220 ~ 33762528 (-)
G57322 NA other downstream 44752 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 64279 33423664 ~ 33442815 (-)
slc38a6 slc38a6 other downstream 162258 33337403 ~ 33344836 (-)
G57210 NA other downstream 407522 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 778353 32715827 ~ 32728741 (-)
trnag-gcc_5 NA other upstream 13241 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 46092 33562778 ~ 33570236 (-)

Expression


Co-expression Network