jag2a (LOC108263062)


Basic Information

Item Value
gene id jag2a
gene name LOC108263062
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32191850 ~ 32230995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302784.1
AGGGAGCGAGTGAGTgggtgtgcgtgcgcgcgcgctgGTCACTACTTTAACTTTTCCTCACTaacgcgcgcgcgtgtgtgtgtgtgtgtgtgtgttttttcctcctccGCCTCAGACGGAAAGGTAGCGGAGGCGCAGCGCGCGGCGTGGCGGATGTTCTCACCTCTCACGAGCGTCTTTATCATGGAGAACCGCGTTCTGCTGTCCGTGTCGTTACCGTGAAGCCTCACCGGAGTCATGTGGAGTTGCACGGGCGCTTTCCTGCACTCGGTTTGCCTCATTTTGACGTTTTGGTTTGAGGTGTGCCGGGCGTCCGGTTACGTGGAGCTGCGTGTGATCAGCGTGGAGAACAGGAACGGGGAGCTGGCGAACGGCGGGTGCTGCGGCGGAGAGGGGGGCGAGGGGCGGGGCCAGGAGTGCGGCGCTGTGGAGTGCAACACGTATTTCAAGGCGTGCCTGAAGGAGTACCAGGTGGAGGTCATGACCTCGGGCCCGTGCACGTACGGAACGGCGAGCTCGGCCGTCGGGGGCAACTCGGTTCGGCTCGATGGATTCGGTAATAACCGAAACAAAGGCAACAACGTTGGGACTTTAATCATTCCGTTCCAGTTCGCCTGGCCGCGAGCATACACACTGATCCTGGAGGCGTGGAACTGGGACAACAGAACCGTCACTGCTGACAATGATGAGCAGCTGATCGAGCGCAGTGTGTATCGGGGAGAGATGAACCCCGGCGACGAGCGTCAGCTGATCCAGCACCTCGGCCTCACCGCCAGTTTCCAgtacagcgtgtgtgtgcgctgcgATCGCCATTACTACGGCAACAAGTGCAACAAACTGTGCCGACCCCGCGATGACCTCTTCGGCCACTACGAGTGCGATCACCATGGCAACGTGCAGTGTTTGGAGGGCTGGACCGGACCCGACTGCAAGAAagcGGTCTGTAAGCAGGGCTGCAGTGAGCTGCACGGAAGCTGCGCCGCCCCGGGACAGTGCACGTGTAGTTACGGCTGGCAGGGTCCTTTGTGTGACGAGTGTGTGCCGTACCCGGGCTGCGTTCACGGCACGTGTGTGAAGAAGTGGGAGTGTATCTGTGAGAAGAACTGGGGCGGGCTGCTCTGCGACAAAGACCTGAATTACTGCGGGACTCACCGGCCGTGTGTAAACGGAGGGACGTGTATGAACACCGAGCCGGACGAGTACCGCTGCGTTTGTCCCAACGGCTACTCGGGCAAGAACTGTGAGATAGTGGAACACGCGTGTATGTCCAACCCATGCGCCAACGGCGGGACGTGCCACGAGATTGTATCAGGATTCGAATGCCACTGTCCATCAGGGTGGTCAGGGACGACCTGCGccaaagacaaAGATGAGTGCATGTCCAGTCCGTGTGCACATGGAGGAACCTGCATCGATCAGGACAACGGCTTCAAGTGTGTCTGTCCACCACAATGGACGGGAAAAACCTGCCAGATAGacgtgaatgagtgtgtgaagaggCCTTGTGCAAACTCTTACTCGTGTAAAAATCTGATTGGTGGATATCACTGTGCCTGCTATCCAGGGTGGGCGGGACCAAACTGTGACATCAACATTCGCACGTGTTACGGCCAGTGTCAGAACGGCGGCACGTGTACGgacggGCGTCACGGCTACGTGTGTCAGTGCCAGCCGGGGTTTGTGGGTAAGCACTGTGAGGtgcagcagagtgtgtgtgtgagctcgcCGTGTCAGAACGGCGGTCAGTGTCACgccacacacaccacctacgagtgtcagtgtgtgagcgGATACACAGGGACACACTGCGagGTGCAGGTGGACCCGTGTGTTCCTAACCCGTGTGTAAACAAAGCTGAGTGCCACGCCCTGCAGTCAGGGTTCTACTGTGAGTGTGCTGATGGTTATGAGGGCAGAACCTGCGCCGAGCTGACGGACCACTGCAAGATCAGTTCGTGCCAAGTGATTGACAGCTGCACCATTTCCGTGGCGAACAACTCCAGCAAGGAAGGGGCGTGGCACATTTCATCCAACGTGTGCGGCCCGCACGGTCGCTgtatcagccaatcaggaggcAACTTTACCTGCGCCTGCCTGCCAGGGTTTACAGGGACCTACTGTCACGAGAatgtgttactgtgtgttactGGTCAGCTCTGTGAGCGGGGAACGTGTTTAGATGGCATTAACTCGTTCAGCTGTGTCTGCCGTAACGGATGGGAGGGTCAGCTCTGTGAACGCGAGGTGAACGAGTGTGAGTCTGAGCCGTGTATGAATGGTGGTCTCTGTGTCGACCTGCTCAACGACTTTTACTGCCACTGCGCGGACAACTGGAAGGGCAAGACCTGTCAATCAcgagAGAGTCAGTGTGACTCCACCACGTGTTTGAACGGTGGAACCTGCTTTGATCACGGAGACTCGTATCGCTGTGTGTGTCCACCTGGTTTCGGAGGCAGCACCTGTAACTCAGCGATGAACAGCACGTGCGACTCTCAGCCGTGCGCTAACGGGGGGACGTGTGTCGGAGGGGGTGGAGCTTTCACCTGCATCTGCAAGGATGGGTGGGAGGGGCCTACTTGTACTGAGGatgttGATGACTGTAATCCTCATCCATGTTATAACGGAGGTGAGTGTGTGGACGGAGTGAACTGGTTCCGGTGTCAGTGCGCTCCTGGGTTTGCCGGCCCCGACTGTCGCATCAACGTGGACGAGTGTCAGTCGTCTCCCTGCTCGTACGGAGCCACGTGTGTGGACGAGATTAACGGTTATcggtgtgtgtgtcctgtgggCCGAGCTGGATCACGCTGTCAGGAGTttatCGGTGTTGGTAAGGTGTGTCAGCACTCGGGCGTGTCCGTTCCTCACGGCAGTCGCTGGGAAGACGACTGTAACGGCTGTCAGTGTATGAACGGAAATATCAAGTGCACCAAAGTGCATTGCGGCGGTCGGTCCTGTCTGCTCGACTCTCAGGACCCTGAGTGTGCTGGAGGTCAGGAGTGCATgccgcatcacttcctgttttgtctCCACCCACCGTGCCAGCAGTGGGGCGTGTGCTCCGATCCCGATCCTTCACCAGTCAGCACCGAATGTCAGCCCAACACCGATTACACGAGCAGCGACTGTGCGCGCGTCACCCTCGTGTTCGATACAGACAGCGTGCCTCCGggAACAACTGTCGAAGGAATCTGTTCTGAACTCAGATATCTCCCAATCACGCGAACCCTTGCCCGAGACCGCACCCTCTTTATTCTCTGTGACCAATCACAATCGAGCAGCAACGCTGTGGAGGTTGCCATGtcgTTTGAACAGACTGCAGCGTTTGAGGAGCACGCAGACATACAGGAAGTAGTCAGCTCCATCATCAGCGTCCTCTCCAAACGCCACAACAGCACGCTGCTGCTGGCCATCCGAGAGGTCAAAGTTGAAACGCAGGTCATGCCCACATCGCTGGATTACCTGGTCccgctgctgtgtgtgttgttctccGTGTTGTGGATCTCCTGCACGGTGGTGTGTGTCTGCTGGATCCGCAAGcgcaggaaagaaagagaacgCGTCGACGCGCCAGTGGAGGAGAGCATCAATAACCAGCGAGGGGCGTTTCTGAGCATTCAGTCCTCTTACAGAGAGGACAGGAAGAGTGTAACGTATCCGCTGGACAGGATCGGAGACGGAGCGGAGAGacaggatgaagaggaggacgacgacagagaggaagaagggAGCCCAGGGCTGGTGGTGGATAAGTGCCCTTCCTTAAAGTACACTAAAGGGGAGGTAGTGTACACCGTTTGCACCGCAGCCCAGACACATCCTTTAAGGACGCACTACAGCGCCAAAGACAACCGGTGTAAAGACGTGAACCGGAGTGAGCAAGTCTCCGATTGCTACATATGAACAAAACTGTCTGGAGCTAATCCAGATTTTTCACACTCTTCTATTTCTGTTTACACTTGTgtcattatttgcattttgtttttgtttttttaaataaaaatggaccTGTCTCTATGGACGCGGCGGGAAATTTGGTTGAAGGTGAATCTAGAAACGGCAGCTCGGATTTTGATTTGTAGTTTTGGATTTTCTTTGAGTCGTGACGTGTGTGAAACGTGTGTAATACGCGCCATTAGCGTATTTTCCGGACTATAAGATGCGTTCATTCCTCTGGTAAATGCTGGTGCAACGTTTACAGCAAAGTGATGTTTGTATTACCGTTTTACGTTAGCATATTGTtaccatctttttttaaataacgtaAATATACCATTAAAACTAACTACAAGGATTGGGCAATATGGCAGAaatattatatcacaatacttcAAGATGGTTCGTGAGACACAGTGTCTCACgcatgaaacattttattttcatcatttatcatttattttatcacaACATGGCTTTAAAATTGCTGATAAAAACTATAAGTTCAATAGTATTACTCATAAgaaatattcataattttaatttttgctgtatttttgcaaatatgtttttcaaaagaaacaacactaagtgaaataaaaaacatttccaccagTAAGCAATGACACTAACTTTAGGTCAATTTAAGTAAttaagcataaaataaaaagtagttCTACTAAGTTTAGGGAATTTTTCCCCtataaaactgacaaaaaaattcCCAGCAATATAAAGTGACACTAATTTctaaattaagtaattaaaaaaaatcataaaacttTAACAAgaaactgaaggcaaaaaaaaaaatctacaatagAGAACTATAAGAAGAAGCTACACAGAACATTAGtgtgctgtttatttcttttttttaaagtaacagGAAGTCGTTTAGGGATATAGAGGTATCATAGCTGCAatatatttaagaaaatgtaTCGTGATGTTGCAATATTGATAACGTATCATTGTATCATCTACCACTAAGTGAGAAATAAAGTGAAATCACGCGCTTGGGTAATTATGACGCcagcaaaaatacagaaatcaccaaactgatgctaaatcagtaaaataatagttaaatgctgacactgaatattattttattacattatttttatatgatttttttatattaagttACTGAATAACTTTATGTGATCAAGCCAGACGAgttgttaaatgttattttttgaaGAAAGCTGGTTgtaatctttaataaaaattatgtaCATTAATGTAACTTGTGCAACAAGGCATCTGCTGTTTACTGATCTTATCTCTAATCAGACAGAATGTGTGTGGGGTTTTATGGTTTATGTTTTATATCCTGGAACAATCTATAGTCCGGAAAATACAGTACACGGAGGTGATTAGATGAAAAGTGAACGGCTTAACCCTTCAATCATTCATTGTTCATCTCATCatttgtgtgtaataaatgcttaaagtgtgtaaagtttcATTTCTACACTGTATGACGTTTCCGTTTTTCAAGTTCGCCACCGGTTTTGACAGAAAGTGggaaatgtttttgctttttacagATTCACAGAGaaagactaaaataaatgtaaaaaaaaaaaatgttaaaaaaagtgtaagaaaaaaaaatacatgtgtacatgtgtaaatAGGAAAGAGTTATAGCTGTGTATATTTGAGTTTAGTAACTTAagagactttttatttttattattattattattattatttctgtcaaatatttttgctccatttttctttgttaatattCTCATTCCTATTATTTATGTTGgctaataatatatatatatatatatatatatatatatataaatccctAGAGTGCTTACGATCATGATGtttgtgttctttgttttgCTCTGAAGTCTGTAATCAGAAATCTGTAGGACTTTGTGGAAAGAATTTgttcaaatgaaaacattttacttcacaaatcagtctgtttcctgttttgaaAGGATATATCACTTCAAGTATTTGATGACTTCTTTTTCCTCCTGGGCACTagaaggtgatttttttttccagaaattatGGAGCTGTTGgggttttactttttattttgtgagaCATTTTGGAATCATAAGTGGATCAGCATTTCATGACATTAAAAGAACTTGTAataataaagagagacagaattttgtttcatttttaaaaaatgaaaataaaaatgctaaacaatta

Function

NR:

description
PREDICTED: protein jagged-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302784.1 True 6135 mRNA 0.47 28 32191850 32230995

Neighbor

gene id symbol gene type direction distance location
esr2b esr2 coding downstream 3003 32131447 ~ 32188847 (-)
gphb5 gphb5 coding downstream 185200 31996509 ~ 32006650 (-)
slc30a10 LOC108263333 coding downstream 571519 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 666950 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 1166005 31022661 ~ 31025845 (-)
dcdc2b dcdc2b coding upstream 84463 32315458 ~ 32331216 (-)
iqcc NA coding upstream 100398 32331393 ~ 32336477 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 108239 32339234 ~ 32345727 (-)
LOC117596868 NA coding upstream 135315 32366310 ~ 32367790 (-)
nusap1 nusap1 coding upstream 144969 32375964 ~ 32381037 (-)
G56614 NA non-coding downstream 119352 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 258260 31859807 ~ 31933590 (-)
G56315 NA non-coding downstream 345655 31845037 ~ 31846195 (-)
G56271 NA non-coding downstream 364716 31817253 ~ 31827134 (-)
G56279 NA non-coding downstream 461738 31728773 ~ 31730112 (-)
G56693 NA non-coding upstream 12928 32243923 ~ 32244290 (-)
G56670 NA non-coding upstream 69311 32300306 ~ 32309955 (-)
G56661 oip5 non-coding upstream 150132 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 168920 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 183914 32414909 ~ 32415460 (-)
G56303 NA other downstream 353615 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 360918 31678383 ~ 31830932 (-)
G56272 NA other downstream 362366 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 591165 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 643217 31545901 ~ 31548633 (-)
brf1a brf1 other upstream 8606 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 115760 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 143341 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 422841 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 484832 32715827 ~ 32728741 (-)

Expression


Co-expression Network