arhgap10 (arhgap10,LOC107742542)


Basic Information

Item Value
gene id arhgap10
gene name arhgap10,LOC107742542
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4785773 ~ 4878809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302822.1
CAGTGGGAGGGGCTAGAGCTGCACAGTCTGTCATTGCAAATGTTTGGGCGACGTGGACCTGCAACTTGACCCATTAACTTTatcttattgtattttttttttcttcctcaagAAAGTATTTCATTTTGTGCAGGTTATAAAGCGGATAATTCCTTTACAACCCAAGACGCGGGTTCTTTTTGTAGGGAAAGactttatttcagttattattgaAGGAAAAGCCTCGACTGAGTTCATCCAGAAATAGCTCCTGGACATTTGGGAAAAGTGGACTGGACTGAAAATAAAGCTAATGTAGCGTTCAATATCCggtttttttgcttctttttgtAGCCAGTCAGCTTGTTTGTAGTCTCCTTGAAGTGAGTAAGGTCAGAGCCATTCATTaagaaggaaaagagaggaagagaaatggGTTTGCACCCGCTGGAGTTCAGTGAGTGTTACCTGGACAGCCCAAGCTTCAGGGAGAAGATTAAAGCTCATGAAGCAGAGCTGGACAAAACCAACAGGTTTATTAAAGAGCTTTATAAAGACGGGAAAAACCTCATCAACGCCACAAAACAGCTCTCTCAGGCCCAGCGTAAGTTTGCTCAGTGTCTGGGGGAGTTCCAGTTCGAGTACATCGGGGACGCCAAGACTGATGATGAAAAGTGCATCGatgAGTCTTTACAGGAGTTTTCCGCCTTCCTCAGAAACCTGGAGGACCAGAGGGAGCTGATGATGGCGAAcatcacagagacactgatgAAGCCTCTAGAGAAGTTTCGGAAAGAGCAGCTGGGTTCAGCCAAGGCAGAGAGGAAGAAATACGAGAAGGAAACGGAGAAGTACTACACATCTTTGGAGAAACTCTTAAACATGTCAGCAAAGAAGAAGGAACCACAGTTGCAAGAGgcggATGTGGCAGTGGAGACGATGAGACAGCACTTTCAGGAGGAGTCTTTGGAGTACGTGTGCAAGCTGCAGGAAATCCAGGAGAGGAAGAAGTTTGAGTGTGTCGAGCCTATGCTGGCTTTCTTTCAGACCATGTTCACTTTCTACCATCAGGGATTTGAGTTAGCCAAAGACTTCGACCATTACAAAAGAGCCCTGCAGATCAATATTCAGAATacacGGAGCCGTTTCGAGGGAACTCGCTCCGAGGTGTATGAACTGATGAAGAAGATAAAGGAGGTTCCACACGACTGCAGACAGACCAGCCGCATCAGCAGTGAGGGCTACCTCTTTGTCCAGGAGAAACGTCCTCCTCCGTTTGGCTCCAGCTGGGTGAAGAGGTACTGCACCTTCGTCAAGGAACAGAAAATCCTCCACATGATCACGTACGACCCCAAGTCCGGCGGCAAGTTTGGTGAAACCGAATCTGTTACACTCAAATCCTGCGTGCGGAAAACTACAGACACTCTGGACCGCCGGTTCTGCCTGGATATAGAGATTACTGACCGCCCCGGCATCGTGCTCACAGTCCAGGCGTTCTCCGAAGATGACCACAGGTTCTGGATGCAGGCGATGGGAGGCAAAGAGCCGGTTCACCATCTCGGGACAACATATTcaaaagaaagaggaaTCGATGCACAGCTGGACGACGTCGGCGTGAATTTTGTGAGGAATTCAATCAACGCTGTTGAAGcaagagGGATCAATGACCAGGGCTTGTACAGAGTGGTCGGGGTCAGCTCCAAGGTGCAGAAGCTGCTCAGTCTGATGATCGaTGAAAAGAGTAGTGAAGTGGACTTGGCCACGTGTGAGGACTGGGACGTGAAGACCATCACTAGCGCTTTAAAACAGTACCTGAGGAGTCTTCCCGAGCCGTTAATGACGTACGCCCTGTATAAGGAGTTCATCGTCCCTGCAAAGAGTGCGAGTCCAGAGTCCCGTGTTCAGGCCATTCACTGCTTGGTGCACAGACTGCCTGAGAAGAACCGAGAGGTGTTGAGCTTGGTCACCAAACATCTCGCAAAtgtggcGGCCCACAGTAAGCAGAACTTGATGACGGTAGCGAACCTGGGCGTGGTGTTCGGCCCCACCCTCATGCGGCCTCAGGAGGAGACGGTGGCGGCCATCATGGACCTCAAGTTCCAAAACATCGTGGTGGAGATTCTCATAGAGCAGCACGAGAAGATTTTTGGAGATGCTCCGAGCGTTAGTCCATCCTCAACTCTGTCTCCATTCACTGCTCCAACGCGTCAGTCTAAGAAGCAGGTGCGCCAGAGCCGCCCGCTGGCTGTGTACAACCCCCTGGACATCCATGCAGTGTCTCCGTCCTCTGAGAATGTCTCTCTGACCCCTGATGAAGCGTCTCTGGGCAGTAATGAGTCCGTATCCTCACAGTCCTCCACAGCGTCGACCTCAGAAACCCCACCAGAGAAGACCGAGAATCCCCATGGCAACACCGTGGCCACCCCACAGAACTCTGGggGGGAGCAGGCATGGTCATGGATGAACTCCACTCCTACATGTTTAACACCTCAGACTAAAGCTGCAGACACAGAAGCAGCAGCAACCGGAGGACAGACCGACAAATCTGCAGAAAGTGTCACTCTCATGAAAGCCAAGGCTGTGTACCCCTGCGAAGCCGAGCACGATTCCGAACTCTCCTTCCAGGTCGGAGCAATCTTCCACGCTGTGACTCCGTCTCGAGAGCCCGGCTGGTTGGAAGGAGAGCTGGAGGGCAAACGAGGCCTCATCCCTCAGAATTATGTGGAAATACTGCAACAAATGGactaagcttaaaaaaaaaaaaaaaaggaaaggaaaggaaataaaCGGGAATTTAATATACATGGTATCCATGGTGTGACCTTGACCTCTCCCCCAGCTTACACGTTTTGTTTCTCCATCTGCACCACGAGTGACCCATTGAGGGTATTTCTAGGAGTAGACGTGGCAGATTTAACGTTCCTCCAACCTTTATGTTGTCTTAAAAGCATAAGCCGGTAAAGCTCTGAGGTTCACGAGTTCAAAACTGtaattattaaatgtgtttcaagggtggattttttttttttttttttgcatgtttttgtggtttttaagTAGCTTGGATCTAATGCATGggtgtataatattttatattatttaattatgcagttcctttaattaaagtgtgtgtgtttaaactgaATACGATTATACGTATTatataaatgttgaaaatgacGTAGCTATGTAAAGTTTCAAGTTTAAAGCACTCCCACATTGTGACGTTCACATATTTGTTCCGATGATCTGCTTTCGAGTTAAAATGCTGTGCCTTAATCTCACCATGCTTTTTGTGGCTTCGACGCCATCCAAGAATCTGGATGGAATCTCATTTTTACAGAGTGTACGTagtgaaaaaatgttttctatgcCAAGAAATGACTCGTATATCATCCgaattaaatactaaataaaccaAACCATTTCAAGATGGCTGTAAATGCAGTATTGCCAAGtcttatacacacatttatgtgtctttataattattattctcTAAAGGACGTTAAAGCTCAAGTGCATCCCGAGGTGGTTTGGACATTCTCAGTGTCTCACACCgcagtttaatttcatttcttttctacCAGCCTTTTCTTCTTATGGTTTGTACTTGTGACTGAGCACCATGGCAGTAATTTAAGACAGTGATTTATGGCTTGGCACTGCTCTGATTTTTGTCCTGTTGGAAAAGCTGTcgatcaatgttaaataaataaaagctttttattcctc

Function

symbol description
arhgap10 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP10 (Rho GTPase activating protein 10).

NR:

description
PREDICTED: rho GTPase-activating protein 10 isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K13736 ARHGAP10; Rho GTPase-activating protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302822.1 True 3714 mRNA 0.46 24 4785773 4878809

Neighbor

gene id symbol gene type direction distance location
fam193a fam193a,LOC103156485 coding downstream 245150 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 312475 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 489644 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 496334 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 511606 4259731 ~ 4274167 (-)
ednraa ednra coding upstream 42979 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 199551 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 478732 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 512347 5391156 ~ 5401649 (-)
smad1 smad1,LOC103023608,LOC107734580 coding upstream 524685 5403494 ~ 5433155 (-)
G40980 NA non-coding downstream 11120 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 16553 4765079 ~ 4769220 (-)
G40966 NA non-coding downstream 41699 4743727 ~ 4744074 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding downstream 46062 4739384 ~ 4739711 (-)
G40938 nr3c2 non-coding downstream 116780 4667206 ~ 4668993 (-)
LOC117596884 NA non-coding upstream 382382 5261191 ~ 5264789 (-)
G41114 NA non-coding upstream 399142 5277951 ~ 5281223 (-)
G41174 NA non-coding upstream 721175 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 997292 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 1416423 6295232 ~ 6302088 (-)
dclk2a LOC108263760,LOC108429594 other downstream 176323 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 1751220 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1751836 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1752970 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1801570 2220147 ~ 2984203 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 15093 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 324897 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 877208 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2282665 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2560095 7438904 ~ 7589663 (-)

Expression


Co-expression Network