brf1a (brf1)


Basic Information

Item Value
gene id brf1a
gene name brf1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32239601 ~ 32289607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302823.1
ACTTGACGCTGTATCGCTCTAGCACATTTGAAAAGGGGTGATTAGTACTTTTAACGCTCAGTACATGGCAGTGTTACGATAATACTCGTAACTTTGATttattgtacattattttatgaaaaatagaTACTTTAGTTGTTATTAAGACGCCATAACGAGACTAAAAGGTCTACTTAAAGCTTTTTAAACACTGCGCCCCCCCCTCCGTTAGGAGCGACAGTGGTATGATCCATATGgcacgctgctgctgctgaacatGTGCTGTTTGTTGATCTGATAGCGCAATGTCTACTTATTGAGGGTTAATGTGGTTATTATCCGGCTTGTCAGGTGAAGAGAGTGAGCTAAGTATTTACGATACATCGCGTTCTTCAGATATTTTGTTCAGTTGAATTACAGACAGTTCATTTTCGGGAGAGAGGAAGCCGAGTTAGCCACGCGCGCGCCTGCAGGATCAGGCAGGACATTAAGGGACCCTGCTTTCAGCTGCTCCAGACAGTTTGTCTCTCTGAGGTGACCGCGGCACCGACACCATGCGGAGGTGTAAGAACTGCGGTGGGACGGATGTGGACGTGGACCAGGCTCGCGGTGACGCCGTGTGTATGGGCTGCGGCTCCGTGCTCGAGGACAACATCATCGTCTCGGAGGTGACGTTCGTGGAGAACAGCTACGGAGCCTCGTCAGCGGTCGGCCAGTTCGTGGCCTCGGACTCTCAGGGCAATGTCCCGTCTCTGGGTGGAAACTTAACGGGGATGGGAAAAGAGTCCAGAGCACAGACGTTACAGAACGcGAAGAGGAATATAAATCACCTGGGCCACCAGCTGCAGATGAACCAGCACTGCCTGGACACGGCCTTCAACTTCTACAAGATGGCGCTGTGTAAACGCCTGACCCGAGGGAGGAAGTCGGCCCACGTCATCGCCGCCTGCCTCTACCTGGTGTGCAGGACGGAGGGCACGCCCCACATGCTGTTGGATCTTAGCGATCTGCTGCAGGTCAATGTGTACGTGCTGGGAAGAACGTTCCTGGTGTTGGCTAGAGAACTCTGCATCAACGCTCCAGCCATAGaTCCGTGTCTGTACATCCCCCGCTTCGCCCACATGTTGGAGTTTGGCGAGAAGAGCCACGAGGTGTCTATGACGGCGCTGAGACTCGTACAGAGGATGAAGAGGGACTGGATGCACACGGGACGAAGGCCTTCGGGGCTCTGTGGAGCAGCTCTGCTGGTCGCCGCACGTATGCATGAGTTCCGTCGCACCATCAAAGACGTGATCGGTGTTGTTAAAGTGTGTGAGGCCACGCTGAGGAAGAGgctgAGTGAGTTTGAGGACACGCCCACCAGCGAGCTGACCATTGACGAGTTCATGAGGGTGGATCTGGATCAGGAATGTGACCCGCCCTCTTTTAAAGACGGACAGAGGAAGCTCCGGCTGCAGAAGATCGAGGAGGAACTGGCTAAGAAGATCGACGACGTTCAGGgtgaaaTCTCTGGCTATCAGGACGAGATTGAAATGGAGCTGGAGAACAGTCGACCAAAATCCAGAGGGATCTTTGCAGCTTATGCAAAAaatgACGACGCCGTCTCTGTGACGTCATCCAGCGTGCACGATCTTGACGACGAGGGCGAGGATGAAGACCTGCGCGTGGCGGCGTCTCACCTGAGCAAAGACCTGCCCGGCGTCAGCGACGGAGAGGAGCAGTGCGATGATGAGCGACAGGAAGCGAGAGAGGAAGAGCGAGACTCTCAGCCCAAGCGTCCGTCTCTGGAGGCTCTGCTCGGGCCGCTGCCCACCGCCGCCAGCCTCGGCCTGTCCGACTCCATCCACAAGTGCGTgggagaggagaaggagaacgAGAACGAGCAGACGGCGGACGGCGGTGAGCTGGACCTGAGCGGGATCGACGATGACGAGCTCGAGTGGTACATCCTCAATGAGAAGGAGGTGAAGATTAAAACTGAGCTCTGGATGCTGGAGAACGCAGACTACCTCAAAGAACAGAAAGaaaaggAGGAGAGAATAGCGAAGGAGAAAGAGCTGGGTATCTACAAGGAGAAAaagCCGAGGAAACGGGCTCAGAGACGAGCACCGATCAACGCCAGCACGGCTGACGAGGCCATTGAGAAGATGCTGGAGCAGAAACGGATCTCCAGTAAGATCAACTACGACGTCCTGAAGGACCTGAACCGCTCGAGCGTGAAGAGCCCGCCGCCCGAGCCGAAGGAGTCTCCGGGCCGCGCCACGCAGAGGAGGACACCGTCAGCGCGCCCCCGCAAAGCCAACGAGCTCTCGGCCAGTCTGGCAACGCCGGCCAGCAACTTCGGCAAGAGGTTACGGCCACTGATCTCGGCACAGCCTGCTAAGAAGCCAGTCCTGGATCAGCTGGTGTCTGAGACTGCAGACGCCCCTGCGGcggttacccacaatgccgtggTGGTGGAGAGCGGGCCCGTAGCGTATGAAGACCcgggagaggaagaggaggaggaagaagaggagcagTGCGTCAGTGCCATGCAGCTCATGGGAGGAGACGaTTACGGCTATGATTTTGACGACGATGATTGACTTTAGTGCCGCTGTGTGTAAGCGAGATGGACTGCTAAAGACACAAGCTGCTAACACTGCacctacacgcacacacacacacacacacacacacacacacacacacacactgctgctgcctTATACTTGAAGAAACAGTATTGTTTTACGCACACACTGTGACTATAATGCTGCTGATATTAGACATAATGCATTCATACATGTGTGTTTGATTattacaaagtgtgtgtgtgtgtgtgtgtttgttttatctcTAATAAGGTCCAATTAGTGAGACAGGGAGCATAGAACAATCTTCAGCTTGTGtgacatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgagcgCTTCTTGTAATTATATTAGCGTGACATACATAGAGCTGAATGATGGCTCATGGCCATGTGCAACTAAATGGACTACACTTtaatgttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgttagagagagataaagagaagtAGTAGCCGAAGACAGCGTGTTCAAAATGCCAAAGTATTACAACATTATGGAAAGCcttgctcttgctctctctccctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctatgctGCTAATCCAGAGCCTTTGGATTCCAGTTTCTACCAGGTTCatattgtgttgttattttttaatttttttttaatttttgttaatttagtGACATCATGAACATGATTTTGCTCAGATGCTTTGACTaaacgtattattattattattattattattattattattgcaggtTAGTGCTGTGTTTTTTAAGCTGttctgtgattatttatttttttcacagtctTGCCTTTGCGACTCTCCTTAGACAGCGATGACAAATCATAACCAGAGTGCAATAAAATAGTAACTGACGTGTAGAGAATATTGCTAATATTTGCGTAGATTCCCAGGTACAAGCCGAACATACGAGAGTGAGTCAAACGAAAACAGAAATTATAATCAAAtcgattttatttatttattttttttaaaggaggaATCCAGACACTCGTCAAGAGTTCATAAGTGGTAActgtttgcaataaacaatgcaaaattaaaaaaataataataaaaataaggcCATCATTTGCCTTGTACAGTATAAGagcataatgtttaaaataaagcattCTAATGTCAGGAAAAACACGGTAAGGAGGAGCTGAGAAACGCCAGGCTTTGAATATATTTAGCTGGAAAACTCGGGTGTTTTATTTAGCTAACGGTACAGTATAgagctgttgctatggttacgtcTCAGACTTGCGTCTCGCTCTGATCTCGCGCTCTAGTCTCTAAATGATGGCTTTCTGCTTTCTGTGTGTTGGGTGGAGCAATAAGCTAAGATCATCACAGTAACCAGGTTCACATAAAAACGGGTGTTGATcgaataaatgcagcttgtgacTGGTACAGCGTTTATTTCGTAACCCGAAGATCCACGTAGCCGCCTCCTGACGACGTTCTGAAGCCTCTGTGATGATAACGCGCATGCTGagttgtgttatttattatatgacATGCCTGTAGAGAATATTACATCTtctatatattacatatattactgCAAAGTGCTAAAGGGAAATCTGTACAGAGAGCAGAGGAATGTAAAGCGAGGGGAAAGAAAAGTGCTGCCTGTACGGTGTGAAGATCATTTTCATAAATGCATCTGAAGTATTAAAATGAGCCGAGATTGACCGTTTCTGTAACTGTGTTTGGAattgctgtgctgttatatactGTTTATACAGATGAATCCGACTCACCACAACCACCACGTCctcgattattttcctctaacagcaccaCACGGAGTCTACACTCTTACCCTGCTCTGTtggaagaatgtgtgtgtcGTGTCTTTGTGCTCACACTCATCATCTAAGGGCCGTGTAATTagttactgtctctctctctctctctctctctctctctctctctcaagagAATGAAGGATTCATGTAAATCATTCCTGCTGCTTCAGGAGCCTCAGTATATCATTATACTTTAAGATACAATCATTTCTGAAAACTGAACCAGTCATGTAGTGCTGTTGCTTAGCTGCTTCTTAATTTGGTCACGTTGCTCCCTCTAGTGGTCATTCACAGTAAGTACAGACAGCGACCCCTGTACACaacctgcaaaaaaaa
>XR_004577843.1
ACTTGACGCTGTATCGCTCTAGCACATTTGAAAAGGGGTGATTAGTACTTTTAACGCTCAGTACATGGCAGTGTTACGATAATACTCGTAACTTTGATttattgtacattattttatgaaaaatagaTACTTTAGTTGTTATTAAGACGCCATAACGAGACTAAAAGGTCTACTTAAAGCTTTTTAAACACTGCGCCCCCCCCTCCGTTAGGAGCGACAGTGGTATGATCCATATGgcacgctgctgctgctgaacatGTGCTGTTTGTTGATCTGATAGCGCAATGTCTACTTATTGAGGGTTAATGTGGTTATTATCCGGCTTGTCAGGTGAAGAGAGTGAGCTAAGTATTTACGATACATCGCGTTCTTCAGATATTTTGTTCAGTTGAATTACAGACAGTTCATTTTCGGGAGAGAGGAAGCCGAGTTAGCCACGCGCGCGCCTGCAGGATCAGGCAGGACATTAAGGGACCCTGCTTTCAGCTGCTCCAGACAGTTTGTCTCTCTGAGGTGACCGCGGCACCGACACCATGCGGAGGTGTAAGAACTGCGGTGGGACGGATGTGGACGTGGACCAGGCTCGCGGTGACGCCGTGTGTATGGGCTGCGGCTCCGTGCTCGAGGACAACATCATCGTCTCGGAGGTGACGTTCGTGGAGAACAGCTACGGAGCCTCGTCAGCGGTCGGCCAGTTCGTGGCCTCGGACTCTCAGGGCAATGTCCCGTCTCTGGGTGGAAACTTAACGGGGATGGGAAAAGAGTCCAGAGCACAGACGTTACAGAACGcGAAGAGGAATATAAATCACCTGGGCCACCAGCTGCAGATGAACCAGCACTGCCTGGACACGGCCTTCAACTTCTACAAGATGGCGCTGTGTAAACGCCTGACCCGAGGGAGGAAGTCGGCCCACGTCATCGCCGCCTGCCTCTACCTGGTGTGCAGGACGGAGGGCACGCCCCACATGCTGTTGGATCTTAGCGATCTGCTGCAGGTCAATGTGTACGTGCTGGGAAGAACGTTCCTGGTGTTGGCTAGAGAACTCTGCATCAACGCTCCAGCCATAGaTCCGTGTCTGTACATCCCCCGCTTCGCCCACATGTTGGAGTTTGGCGAGAAGAGCCACGAGGTGTCTATGACGGCGCTGAGACTCGTACAGAGGATGAAGAGGGACTGGATGCACACGGGACGAAGGCCTTCGGGGCTCTGTGGAGCAGCTCTGCTGGTCGCCGCACGTATGCATGAGTTCCGTCGCACCATCAAAGACGTGATCGGTGTTGTTAAAGTGTGTGAGGCCACGCTGAGGAAGAGgctgAGTGAGTTTGAGGACACGCCCACCAGCGAGCTGACCATTGACGAGTTCATGAGGGTGGATCTGGATCAGGAATGTGACCCGCCCTCTTTTAAAGACGGACAGAGGAAGCTCCGGCTGCAGAAGATCGAGGAGGAACTGGCTAAGAAGATCGACGACGTTCAGGgtgaaaTCTCTGGCTATCAGGACGAGATTGAAATGGAGCTGGAGAACAGTCGACCAAAATCCAGAGGGATCTTTGCAGCTTATGCAAAAaatgACGACGCCGTCTCTGTGACGTCATCCAGCGTGCACGATCTTGACGACGAGGGCGAGGATGAAGACCTGCGCGTGGCGGCGTCTCACCTGAGCAAAGACCTGCCCGGCGTCAGCGACGGAGAGGAGCAGTGCGATGATGAGCGACAGGAAGCGAGAGAGGAAGAGCGAGACTCTCAGCCCAAGCGTCCGTCTCTGGAGGCTCTGCTCGGGCCGCTGCCCACCGCCGCCAGCCTCGGCCTGTCCGACTCCATCCACAAGTGCGTgggagaggagaaggagaacgAGAACGAGCAGACGGCGGACGGCGGTGAGCTGGACCTGAGCGGGATCGACGATGACGAGCTCGAGTGGTACATCCTCAATGAGAAGGAGGTGAAGATTAAAACTGAGCTCTGGATGCTGGAGAACGCAGACTACCTCAAAGAACAGAAAGaaaaggAGGAGAGAATAGCGAAGGAGAAAGAGCTGGGTATCTACAAGGAGAAAaagCCGAGGAAACGGGCTCAGAGACGAGCACCGATCAACGCCAGCACGGCTGACGAGGCCATTGAGAAGATGCTGGAGCAGAAACGGATCTCCAGTAAGATCAACTACGACGTCCTGAAGGACCTGAACCGCTCGAGCGTGAAGAGCCCGCCGCCCGAGCCGAAGGAGTCTCCGGGCCGCGCCACGCAGAGGAGGACACCGTCAGCGCGCCCCCGCAAAGCCAACGAGCTCTCGGCCAGTCTGGCAACGCCGGCCAGCAACTTCGGCAAGAGGTTACGGCCACTGATCTCGGCACAGCCTGCTAAGAAGCCAGTCCTGGATCAGCTGGTGTCTGAGACTGCAGACGCCCCTGCGGcggttacccacaatgccgtggTGGTGGAGAGCGGGCCCGTAGCGTATGAAGACCcgggagaggaagaggaggaggaagaagaggagcagTGCGTCAGTGCCATGCAGCTCATGGGAGGAGACGaTTACGGCTATGATTTTGACGACGATGATTGACTTTAGTGCCGCTGTGTGTAAGCGAGATGGACTGCTAAAGACACAAGCTGCTAACACTGCacctacacgcacacacacacacacacacacacacacacacacacacacactgctgctgcctTATACTTGAAGAAACAGTATTGTTTTACGCACACACTGTGACTATAATGCTGCTGATATTAGACATAATGCATTCATACATGTGTGTTTGATTattacaaagtgtgtgtgtgtgtgtgtgtttgttttatctcTAATAAGGTCCAATTAGTGAGACAGGGAGCATAGAACAATCTTCAGCTTGTGtgacatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgagcgCTTCTTGTAATTATATTAGCGTGACATACATAGAGCTGAATGATGGCTCATGGCCATGTGCAACTAAATGGACTACACTTtaatgttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtggg

Function

symbol description
brf1 Predicted to enable RNA polymerase III general transcription initiation factor activity and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Predicted to be involved in DNA-templated transcription, initiation and transcription by RNA polymerase III. Predicted to act upstream of or within regulation of mRNA stability. Predicted to be located in nucleoplasm. Predicted to be part of transcription factor TFIIIB complex and transcription preinitiation complex. Predicted to be active in nucleus. Implicated in cerebellofaciodental syndrome.

NR:

description
transcription factor IIIB 90 kDa subunit-like

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302823.1 True 4814 mRNA 0.48 19 32244633 32289607
XR_004577843.1 False 3082 misc_RNA 0.54 20 32239601 32289607

Neighbor

gene id symbol gene type direction distance location
jag2a LOC108263062 coding downstream 8606 32191850 ~ 32230995 (-)
esr2b esr2 coding downstream 50754 32131447 ~ 32188847 (-)
gphb5 gphb5 coding downstream 232951 31996509 ~ 32006650 (-)
slc30a10 LOC108263333 coding downstream 619270 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 714701 31519040 ~ 31524900 (-)
dcdc2b dcdc2b coding upstream 25851 32315458 ~ 32331216 (-)
iqcc NA coding upstream 41786 32331393 ~ 32336477 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 49627 32339234 ~ 32345727 (-)
LOC117596868 NA coding upstream 76703 32366310 ~ 32367790 (-)
nusap1 nusap1 coding upstream 86357 32375964 ~ 32381037 (-)
G56675 NA non-coding downstream 31594 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 167103 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 306011 31859807 ~ 31933590 (-)
G56315 NA non-coding downstream 393406 31845037 ~ 31846195 (-)
G56271 NA non-coding downstream 412467 31817253 ~ 31827134 (-)
G56670 NA non-coding upstream 10699 32300306 ~ 32309955 (-)
G56661 oip5 non-coding upstream 91520 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 110308 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 125302 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 355085 32644692 ~ 32647936 (-)
G56303 NA other downstream 401366 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 408669 31678383 ~ 31830932 (-)
G56272 NA other downstream 410117 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 638916 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 690968 31545901 ~ 31548633 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 57148 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 84729 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 364229 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 426220 32715827 ~ 32728741 (-)
G57210 NA other upstream 729671 33019278 ~ 33099572 (-)

Expression


Co-expression Network