LOC117596854


Basic Information

Item Value
gene id LOC117596854
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3356422 ~ 3358975 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302843.1
TTCTTAGTGAGAACTATCTCTCAAATACATCATACAAGatcCTAAAAAGGAGACACCATGACCAAACCACCAACTCTAAATGAACTGAAGCGACTGGAGAAGTCTGGATTTGGAAAACTTTATCCAAGACACGGACTCAAGCTGCTTTACTGGTTTGCTCATGAATGTCTGTATTTTGATGCCTACAATAGGATGTGCTGGCAGTACGATCCAGAGGAAGGAGATTTTGGTTTCCACCGatttgaaaacagaaatgacGAACATGGTGAGACACTCCTGCCTGATGTGAACCTTGAGTACTACGAGGTGGGCAATCTGAGAAGAGCAGGAGCAGACGAGCTGCCAGATTACGTTCTGGACGATTATAACCAAAACCGTGATCACTCTGACAGCAACATGGATCGCATCATAGTCAGCGTTGATGATGAGTGTTTTGACAGAGTCTATGTGACTCAGCACAGTGATCGGACAGATTTCAACAAAAAAGCCACCTACTGCATCAGCAGGGGCCTCATTATGATTATCAGGCGGCTGACCTTAAATAACTTTCTCTTAAAAACTGGGTATTTGACACTCCGTAAGGACACTGATCAGGGAACTGGGTATTTGACACTGCGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCTGAATACTGGGTATGTGAGACTGGTAGAGGACTCTAAATCTGAAAACCACTGCAGATGTATCATACTTTAAACACTGggcataaatgataaattagtaaactttaaataaattgcaGTGATTTCTGTTGGTTCTAACAAAATCTCCAACAGCTAATTACACCCCTTGATCTAACCTAACCTGTAACGCTTCGTATCAGTTGGCCATACAAGTAAGACCATGTTACAGCACGGTGTCAGGTGGCAGGGACGGACACAGGTGCAGGTACGCAAAAGCTTTATTTAGAATGGTCAGGTGATTGGCAAACACCATTAGACGGGAATCAAAGACCAGAAAACTAGAAATAGGATCAAAAACCAGAGAGAAAACCACTTGGCGACTCTCACTGACTCAGGCTGGATCAGTTATTGTTTCCTGAGAAGTGAACACATGCTGTTAGGAAGCCAGATCAGAGACACACACGAAACCCGGGCAGAATACTGAATGACTTCAGGAAAACCTGGAATAACCTTGTGTCTGGGATTTTCCTTTTTAACAATCGATCATGCTTTCAGTACGTAATGAATTTTCAGTACATTGTATCCATTGCTGAAATTCCTGTAGCTTTTTTGAGCAGTTTGTGATGAAATGGTGGCTGGATCCTGGCAACTAAGCATGGTTTCATGGCTAAAAAACAATCATCCTGAGGCATTCATATTGTTTTACACTTAAATACAGCTCTTGCTCTCCTGAACTCTCATTTCACTTGGTGAGAAGACGGCATTCTGTGTTACACCCTGGACCTCGAACTGTTTCATCATTACTGTTTAGAAGAGATCATCTACAATTCCATAGGAAGtatgtaaaaaattattatgtAATTTCTTTTGGGGTTAACATTACAAATTGAGTTTGTGTTTAGatcatattgttttattatatgatTGCATTTCTATATCATCTTTATACTATACTATCATTTGATTTCAttattctttatttccttttgtaaTCAAAAAGATCAAAAGCCAATACATATGTGATTATTCAAAAAtggattatttaaaattaaagtgaaaaaaaatccaggaaaATGATTGTTTCAGAGAACAATACCTTATCAAGTACtctggaattttatttatttatttatttgtaaagatTAAAGTTTAGCttgtaatatttacattgtTTCTAGGTAATAACCATATAACACTGAAAATCTCTCTTCTTTCAGGCTTCTGTTGATATTTTCCTAGTCTGAACATTACATTTAACACTGACTAATTTATTGATCTTGTTTCCAGCTgatgataataacaataaaatttacATAATGTTTTACCCCTCTGTTGTAT
>XM_034302844.1
CTTTTCCAGATTTCTTTCTTAATATACCTCAGCGCTGTtcaattcttgattctgattagtcTTAGTATCGTTTCTATCgaaacaacttacacagggacttgtatggtggacgctacACATAAACatcCTAAAAAGGAGACACCATGACCAAACCACCAACTCTAAATGAACTGAAGCGACTGGAGAAGTCTGGATTTGGAAAACTTTATCCAAGACACGGACTCAAGCTGCTTTACTGGTTTGCTCATGAATGTCTGTATTTTGATGCCTACAATAGGATGTGCTGGCAGTACGATCCAGAGGAAGGAGATTTTGGTTTCCACCGatttgaaaacagaaatgacGAACATGGTGAGACACTCCTGCCTGATGTGAACCTTGAGTACTACGAGGTGGGCAATCTGAGAAGAGCAGGAGCAGACGAGCTGCCAGATTACGTTCTGGACGATTATAACCAAAACCGTGATCACTCTGACAGCAACATGGATCGCATCATAGTCAGCGTTGATGATGAGTGTTTTGACAGAGTCTATGTGACTCAGCACAGTGATCGGACAGATTTCAACAAAAAAGCCACCTACTGCATCAGCAGGGGCCTCATTATGATTATCAGGCGGCTGACCTTAAATAACTTTCTCTTAAAAACTGGGTATTTGACACTCCGTAAGGACACTGATCAGGGAACTGGGTATTTGACACTGCGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGTAAGGACACTGATCAGGGAACTGGGTATTTGACACAGGGAAAGGACACTGATCTGAATACTGGGTATGTGAGACTGGTAGAGGACTCTAAATCTGAAAACCACTGCAGATGTATCATACTTTAAACACTGggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302843.1 True 2162 mRNA 0.39 2 3356422 3358975
XM_034302844.1 False 993 mRNA 0.44 2 3356563 3357720

Neighbor

gene id symbol gene type direction distance location
LOC113541782 NA coding upstream 3244 3350885 ~ 3353178 (+)
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding upstream 30780 3307834 ~ 3325642 (+)
LOC113543098 tapbp coding upstream 50099 3296533 ~ 3306323 (+)
vegfc vegfc coding upstream 103059 3193301 ~ 3253363 (+)
LOC113541301 NA coding upstream 1156887 2193949 ~ 2199535 (+)
LOC113541773 NA coding downstream 14238 3373213 ~ 3376116 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding downstream 75370 3434345 ~ 3503120 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding downstream 213452 3572427 ~ 3641748 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding downstream 285503 3644478 ~ 3668492 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding downstream 341604 3700579 ~ 3712836 (+)
G38962 NA non-coding upstream 925335 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 929822 2411201 ~ 2426600 (+)
G38895 NA non-coding upstream 1043971 2311651 ~ 2312451 (+)
G38826 NA non-coding upstream 1190937 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 1229755 2123461 ~ 2126667 (+)
LOC117596855 NA non-coding downstream 41820 3400795 ~ 3403106 (+)
LOC117596918 NA non-coding downstream 156126 3515101 ~ 3525121 (+)
G40287 NA non-coding downstream 324368 3683343 ~ 3685205 (+)
G40374 NA non-coding downstream 505721 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 771140 4130115 ~ 4130322 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1265079 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1359157 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2131821 1194219 ~ 1224601 (+)
trmo trmo other upstream 2167828 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2214488 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 472892 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 1305341 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1904607 5263582 ~ 5357860 (+)
G41047 NA other downstream 1959559 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2536456 5895431 ~ 6228685 (+)

Expression


Co-expression Network