psip1a (psip1,LOC108262878,LOC108439950,LOC106610301)


Basic Information

Item Value
gene id psip1a
gene name psip1,LOC108262878,LOC108439950,LOC106610301
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1784540 ~ 1806551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302857.1
TATCCCCCCCTGAGTTAAAGGCGTTTTGGTACAGTCCGATGTTGAGCTGCGCGGGACGGGAGAAGGCGCGTGCTGCTTCCTGagtctgtgctgctgtaattaAACGCAGgttttttttcccccagcgtCCTTCACCATGGCTCGAGATTATAAAGCCGGAGACCTGATCTTCGCTAAGATGAAGGGTTATCCTCACTGGCCTGCACGGATTGACGAAGTGCCGGACGGAGCGGTGAAGCCCCCCAACGCTAAATTCCCCATCTTCTTCTTCGGAACTCATGAAACtgCGTTCCTCGGCCCTAAAGATATTTTCCCGTATTTACCCAACAAAGAAAAATACGGAAAACCCAACAAGAGGAAGGGCTTCAATGAGGGATTATGGGAAATCGAGAACAACCCTACAGTGGAGCTGAATGGACAGAAGGTGATGGCGATGGAAGCGGTTTCGGATAAAGAGTCGGACGGCAGCCCCGAGGAGGACGACGAGGGAAATGAGAAAAgtcaggagaagaagaagaagtccaGTAAAGTGGCTggagatgaggaggaggaggaggaggtggaggaggaggaaggtgaTGGCATGGAGGTGTCTCTAGTGGAGGAAgaCTCACCACCAAAAGACTCAGCAGATGCTGCGAAAGCTAAAAGAGTCTGGAAGAAGAAGGCTGAAGCCGAGCAGGACTCGGAGGAAGAGGGAGGAGCTACGAGCCACACGTCCAGCCCCATGAccGCAGAGACACCAACTCCAAGACGGAGAGGCAGGAAACCCAACGCAGAAAAACTGCTTCTGCTGCAGCAACAGGCCTCAcatggagATGTTGGTGGAGATGTAGAGAAAAAGCGTAAGAGAGCAGCGGACGATAAGAGCAGAGCCTCAGATGGAGAGGAGGAGCGACGAGTAgaggggaagaagaaaaaagaaaaagatgagagtaaaggaggaaagaaagagccAGAGGCCAAGAAGAAGCGCAGTGCCAAAGAGGAGAGCTCATCTGAGTCTGACGAGGACGggAAGCGAAACCGTAAGCGAGCAAAGCAAACAGCTGACGCGGAAAAAGACGGACGACGTAAACCAGAGGAAATAAACGAGTTGGGAAAAGAGGAGGGGAAGAAAGATGaaaggaaaggagagaaaaaaaaggAAGTGTCGACGGAGTCGCGGCTGCAGAGATTACACGGCGAGATCAAAATCTCACTGAAGATCAACAACCCTGATGTGAAGAAGTGTCTGGTGGCTCTGGATGAACTGAGCTCACTACAGCTCACCACTCAGCACCTGCAGAAACACTGCGAGCTCATCGCCACGCTCAAGAAgATCCGCAGGTTCAAGGCGAGTCAGGACGTGATGGACAAAGCCACCAtgctgtataataaatataagactATGTTCCTGGTGGGTGAAGGAGAGACGCTGATCAGTCAGGTGATCAATAAATCTCTGGCTGAGCAGCGGCAGTTCGAGGACGCCAAGAAGGGGGCGCTAAAGAGAGCCGAGCAGAGCAAAGAACCCGGTGCAGataacAGAGCTGTGAACGGAGACTCGAGCCctgaaaataaaaccactgagaCTGAGAGGGAAAGGACCGAGGAAACTGCAGCAGCAGAGCAGAACAGtgTGACGAATCCAGCAGAAGAATCggcctgatgatgatgatgatgatgcaccACTGGGGTGTGTGTGCTAAGCGCG
>XM_034302858.1
ttttttttacaaaatttatcACTGTAAACTTAATGCAGTGACACCAGTGTTGATTTTTTGGTGACTTTAAAGCGTAAACCAGCTCTAACACTTCATAGTGGtttttttcccccagcgtCCTTCACCATGGCTCGAGATTATAAAGCCGGAGACCTGATCTTCGCTAAGATGAAGGGTTATCCTCACTGGCCTGCACGGATTGACGAAGTGCCGGACGGAGCGGTGAAGCCCCCCAACGCTAAATTCCCCATCTTCTTCTTCGGAACTCATGAAACtgCGTTCCTCGGCCCTAAAGATATTTTCCCGTATTTACCCAACAAAGAAAAATACGGAAAACCCAACAAGAGGAAGGGCTTCAATGAGGGATTATGGGAAATCGAGAACAACCCTACAGTGGAGCTGAATGGACAGAAGGTGATGGCGATGGAAGCGGTTTCGGATAAAGAGTCGGACGGCAGCCCCGAGGAGGACGACGAGGGAAATGAGAAAAgtcaggagaagaagaagaagtccaGTAAAGTGGCTggagatgaggaggaggaggaggaggtggaggaggaggaaggtgaTGGCATGGAGGTGTCTCTAGTGGAGGAAgaCTCACCACCAAAAGACTCAGCAGATGCTGCGAAAGCTAAAAGAGTCTGGAAGAAGAAGGCTGAAGCCGAGCAGGACTCGGAGGAAGAGGGAGGAGCTACGAGCCACACGTCCAGCCCCATGAccGCAGAGACACCAACTCCAAGACGGAGAGGCAGGAAACCCAACGCAGAAAAACTGCTTCTGCTGCAGCAACAGGCCTCAcatggagATGTTGGTGGAGATGTAGAGAAAAAGCGTAAGAGAGCAGCGGACGATAAGAGCAGAGCCTCAGATGGAGAGGAGGAGCGACGAGTAgaggggaagaagaaaaaagaaaaagatgagagtaaaggaggaaagaaagagccAGAGGCCAAGAAGAAGCGCAGTGCCAAAGAGGAGAGCTCATCTGAGTCTGACGAGGACGggAAGCGAAACCGTAAGCGAGCAAAGCAAACAGCTGACGCGGAAAAAGACGGACGACGTAAACCAGAGGAAATAAACGAGTTGGGAAAAGAGGAGGGGAAGAAAGATGaaaggaaaggagagaaaaaaaaggAAGTGTCGACGGAGTCGCGGCTGCAGAGATTACACGGCGAGATCAAAATCTCACTGAAGATCAACAACCCTGATGTGAAGAAGTGTCTGGTGGCTCTGGATGAACTGAGCTCACTACAGCTCACCACTCAGCACCTGCAGAAACACTGCGAGCTCATCGCCACGCTCAAGAAgATCCGCAGGTTCAAGGCGAGTCAGGACGTGATGGACAAAGCCACCAtgctgtataataaatataagactATGTTCCTGGTGGGTGAAGGAGAGACGCTGATCAGTCAGGTGATCAATAAATCTCTGGCTGAGCAGCGGCAGTTCGAGGACGCCAAGAAGGGGGCGCTAAAGAGAGCCGAGCAGAGCAAAGAACCCGGTGCAGataacAGAGCTGTGAACGGAGACTCGAGCCctgaaaataaaaccactgagaCTGAGAGGGAAAGGACCGAGGAAACTGCAGCAGCAGAGCAGAACAGtgTGACGAATCCAGCAGAAGAATCggcctgatgatgatgatgatgatgcaccACTGGGGTGTGTGTGCTAAGCGCG
>XM_034302859.1
CTGTGGAAGAGATCCAGCttctgtttttttcccccagcgtCCTTCACCATGGCTCGAGATTATAAAGCCGGAGACCTGATCTTCGCTAAGATGAAGGGTTATCCTCACTGGCCTGCACGGATTGACGAAGTGCCGGACGGAGCGGTGAAGCCCCCCAACGCTAAATTCCCCATCTTCTTCTTCGGAACTCATGAAACtgCGTTCCTCGGCCCTAAAGATATTTTCCCGTATTTACCCAACAAAGAAAAATACGGAAAACCCAACAAGAGGAAGGGCTTCAATGAGGGATTATGGGAAATCGAGAACAACCCTACAGTGGAGCTGAATGGACAGAAGGTGATGGCGATGGAAGCGGTTTCGGATAAAGAGTCGGACGGCAGCCCCGAGGAGGACGACGAGGGAAATGAGAAAAgtcaggagaagaagaagaagtccaGTAAAGTGGCTggagatgaggaggaggaggaggaggtggaggaggaggaaggtgaTGGCATGGAGGTGTCTCTAGTGGAGGAAgaCTCACCACCAAAAGACTCAGCAGATGCTGCGAAAGCTAAAAGAGTCTGGAAGAAGAAGGCTGAAGCCGAGCAGGACTCGGAGGAAGAGGGAGGAGCTACGAGCCACACGTCCAGCCCCATGAccGCAGAGACACCAACTCCAAGACGGAGAGGCAGGAAACCCAACGCAGAAAAACTGCTTCTGCTGCAGCAACAGGCCTCAcatggagATGTTGGTGGAGATGTAGAGAAAAAGCGTAAGAGAGCAGCGGACGATAAGAGCAGAGCCTCAGATGGAGAGGAGGAGCGACGAGTAgaggggaagaagaaaaaagaaaaagatgagagtaaaggaggaaagaaagagccAGAGGCCAAGAAGAAGCGCAGTGCCAAAGAGGAGAGCTCATCTGAGTCTGACGAGGACGggAAGCGAAACCGTAAGCGAGCAAAGCAAACAGCTGACGCGGAAAAAGACGGACGACGTAAACCAGAGGAAATAAACGAGTTGGGAAAAGAGGAGGGGAAGAAAGATGaaaggaaaggagagaaaaaaaaggAAGTGTCGACGGAGTCGCGGCTGCAGAGATTACACGGCGAGATCAAAATCTCACTGAAGATCAACAACCCTGATGTGAAGAAGTGTCTGGTGGCTCTGGATGAACTGAGCTCACTACAGCTCACCACTCAGCACCTGCAGAAACACTGCGAGCTCATCGCCACGCTCAAGAAgATCCGCAGGTTCAAGGCGAGTCAGGACGTGATGGACAAAGCCACCAtgctgtataataaatataagactATGTTCCTGGTGGGTGAAGGAGAGACGCTGATCAGTCAGGTGATCAATAAATCTCTGGCTGAGCAGCGGCAGTTCGAGGACGCCAAGAAGGGGGCGCTAAAGAGAGCCGAGCAGAGCAAAGAACCCGGTGCAGataacAGAGCTGTGAACGGAGACTCGAGCCctgaaaataaaaccactgagaCTGAGAGGGAAAGGACCGAGGAAACTGCAGCAGCAGAGCAGAACAGtgTGACGAATCCAGCAGAAGAATCggcctgatgatgatgatgatgatgcaccACTGGGGTGTGTGTGCTAAGCGCG
>XM_034302860.1
GTTAAAGGCGTTTTGGTACAGTCCGATGTTGAGCTGCGCGGGACGGGAGAAGGCGCGTGCTGCTTCCTGagtctgtgctgctgtaattaAACGCAGcgtCCTTCACCATGGCTCGAGATTATAAAGCCGGAGACCTGATCTTCGCTAAGATGAAGGGTTATCCTCACTGGCCTGCACGGATTGACGAAGTGCCGGACGGAGCGGTGAAGCCCCCCAACGCTAAATTCCCCATCTTCTTCTTCGGAACTCATGAAACtgCGTTCCTCGGCCCTAAAGATATTTTCCCGTATTTACCCAACAAAGAAAAATACGGAAAACCCAACAAGAGGAAGGGCTTCAATGAGGGATTATGGGAAATCGAGAACAACCCTACAGTGGAGCTGAATGGACAGAAGGTGATGGCGATGGAAGCGGTTTCGGATAAAGAGTCGGACGGCAGCCCCGAGGAGGACGACGAGGGAAATGAGAAAAgtcaggagaagaagaagaagtccaGTAAAGTGGCTggagatgaggaggaggaggaggaggtggaggaggaggaaggtgaTGGCATGGAGGTGTCTCTAGTGGAGGAAgaCTCACCACCAAAAGACTCAGCAGATGCTGCGAAAGCTAAAAGAGTCTGGAAGAAGAAGGCTGAAGCCGAGCAGGACTCGGAGGAAGAGGGAGGAGCTACGAGCCACACGTCCAGCCCCATGAccGCAGAGACACCAACTCCAAGACGGAGAGGCAGGAAACCCAACGCAGAAAAACTGCTTCTGCTGCAGCAACAGGCCTCAcatggagATGTTGGTGGAGATGTAGAGAAAAAGCGTAAGAGAGCAGCGGACGATAAGAGCAGAGCCTCAGATGGAGAGGAGGAGCGACGAGTAgaggggaagaagaaaaaagaaaaagatgagagtaaaggaggaaagaaagagccAGAGGCCAAGAAGAAGCGCAGTGCCAAAGAGGAGAGCTCATCTGAGTCTGACGAGGACGggAAGCGAAACCGTAAGCGAGCAAAGCAAACAGCTGACGCGGAAAAAGACGGACGACGTAAACCAGAGGAAATAAACGAGTTGGGAAAAGAGGAGGGGAAGAAAGATGaaaggaaaggagagaaaaaaaaggAAGTGTCGACGGAGTCGCGGCTGCAGAGATTACACGGCGAGATCAAAATCTCACTGAAGATCAACAACCCTGATGTGAAGAAGTGTCTGGTGGCTCTGGATGAACTGAGCTCACTACAGCTCACCACTCAGCACCTGCAGAAACACTGCGAGCTCATCGCCACGCTCAAGAAgATCCGCAGGTTCAAGGCGAGTCAGGACGTGATGGACAAAGCCACCAtgctgtataataaatataagactATGTTCCTGGTGGGTGAAGGAGAGACGCTGATCAGTCAGGTGATCAATAAATCTCTGGCTGAGCAGCGGCAGTTCGAGGACGCCAAGAAGGGGGCGCTAAAGAGAGCCGAGCAGAGCAAAGAACCCGGTGCAGataacAGAGCTGTGAACGGAGACTCGAGCCctgaaaataaaaccactgagaCTGAGAGGGAAAGGACCGAGGAAACTGCAGCAGCAGAGCAGAACAGtgTGACGAATCCAGCAGAAGAATCggcctgatgatgatgatgatgatgcaccACTGGGGTGTGTGTGCTAAGCGCG
>XM_034302861.1
atttattaTAGCAGATGGATATaactttaattataatatttgatAAAGAGATATGTTAAGACTGTTCGATAAAGTGTCACTGTGAATGAAggttaaattgttttttaaataattataatgaggTCATTTATCCCCCCCTGAGTTAAAGGCGTTTTGGTACAGTCCGATGTTGAGCTGCGCGGGACGGGAGAAGGCGCGTGCTGCTTCCTGagtctgtgctgctgtaattaAACGCAGGtttttttcccccagcgtCCTTCACCATGGCTCGAGATTATAAAGCCGGAGACCTGATCTTCGCTAAGATGAAGGGTTATCCTCACTGGCCTGCACGGATTGACGAAGTGCCGGACGGAGCGGTGAAGCCCCCCAACGCTAAATTCCCCATCTTCTTCTTCGGAACTCATGAAACtgCGTTCCTCGGCCCTAAAGATATTTTCCCGTATTTACCCAACAAAGAAAAATACGGAAAACCCAACAAGAGGAAGGGCTTCAATGAGGGATTATGGGAAATCGAGAACAACCCTACAGTGGAGCTGAATGGACAGAAGGTGATGGCGATGGAAGCGGTTTCGGATAAAGAGTCGGACGGCAGCCCCGAGGAGGACGACGAGGGAAATGAGAAAAgtcaggagaagaagaagaagtccaGTAAAgaCTCACCACCAAAAGACTCAGCAGATGCTGCGAAAGCTAAAAGAGTCTGGAAGAAGAAGGCTGAAGCCGAGCAGGACTCGGAGGAAGAGGGAGGAGCTACGAGCCACACGTCCAGCCCCATGAccGCAGAGACACCAACTCCAAGACGGAGAGGCAGGAAACCCAACGCAGAAAAACTGCTTCTGCTGCAGCAACAGGCCTCAcatggagATGTTGGTGGAGATGTAGAGAAAAAGCGTAAGAGAGCAGCGGACGATAAGAGCAGAGCCTCAGATGGAGAGGAGGAGCGACGAGTAgaggggaagaagaaaaaagaaaaagatgagagtaaaggaggaaagaaagagccAGAGGCCAAGAAGAAGCGCAGTGCCAAAGAGGAGAGCTCATCTGAGTCTGACGAGGACGggAAGCGAAACCGTAAGCGAGCAAAGCAAACAGCTGACGCGGAAAAAGACGGACGACGTAAACCAGAGGAAATAAACGAGTTGGGAAAAGAGGAGGGGAAGAAAGATGaaaggaaaggagagaaaaaaaaggAAGTGTCGACGGAGTCGCGGCTGCAGAGATTACACGGCGAGATCAAAATCTCACTGAAGATCAACAACCCTGATGTGAAGAAGTGTCTGGTGGCTCTGGATGAACTGAGCTCACTACAGCTCACCACTCAGCACCTGCAGAAACACTGCGAGCTCATCGCCACGCTCAAGAAgATCCGCAGGTTCAAGGCGAGTCAGGACGTGATGGACAAAGCCACCAtgctgtataataaatataagactATGTTCCTGGTGGGTGAAGGAGAGACGCTGATCAGTCAGGTGATCAATAAATCTCTGGCTGAGCAGCGGCAGTTCGAGGACGCCAAGAAGGGGGCGCTAAAGAGAGCCGAGCAGAGCAAAGAACCCGGTGCAGataacAGAGCTGTGAACGGAGACTCGAGCCctgaaaataaaaccactgagaCTGAGAGGGAAAGGACCGAGGAAACTGCAGCAGCAGAGCAGAACAGtgTGACGAATCCAGCAGAAGAATCggcctgatgatgatgatgatgatgcaccACTGGGGTGTGTGTGCTAAGCGCG

Function

symbol description
psip1 Enables DNA-binding transcription factor binding activity; chromatin binding activity; and transcription coactivator activity. Involved in mRNA 5'-splice site recognition and positive regulation of transcription by RNA polymerase II. Located in heterochromatin; nuclear periphery; and nucleoplasm.

NR:

description
lens epithelium-derived growth factor-like isoform X1

GO: NA

KEGG:

id description
K25057 PSIP1, LEDGF; PC4 and SFRS1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302857.1 False 1696 mRNA 0.52 17 1784668 1806551
XM_034302858.1 False 1686 mRNA 0.50 17 1784803 1806551
XM_034302859.1 False 1608 mRNA 0.52 17 1784926 1806551
XM_034302860.1 False 1667 mRNA 0.52 17 1784681 1806551
XM_034302861.1 True 1745 mRNA 0.49 16 1784540 1806551

Neighbor

gene id symbol gene type direction distance location
bnc2 bnc2,LOC107595060 coding upstream 200618 1394197 ~ 1583922 (+)
foxe1 foxe1 coding upstream 526584 1249073 ~ 1257956 (+)
spag5 spag5 coding upstream 593294 1179478 ~ 1191246 (+)
LOC113524617 NA coding upstream 607696 1171885 ~ 1176844 (+)
hemgn NA coding upstream 619171 1162619 ~ 1165369 (+)
dnajb14 dnajb14 coding downstream 15705 1822256 ~ 1847413 (+)
LOC117596857 pla2g12a,LOC108263807 coding downstream 41674 1848225 ~ 1853432 (+)
LOC113524724 LOC104953273 coding downstream 49970 1856521 ~ 1860800 (+)
LOC113524707 LOC108263800 coding downstream 57664 1864215 ~ 1872988 (+)
si:ch211-113e8.10 zfp91,LOC107674257,LOC107737094 coding downstream 74779 1881330 ~ 1891816 (+)
G38608 NA non-coding upstream 11763 1250800 ~ 1772777 (+)
G38709 NA non-coding upstream 20187 1763871 ~ 1764353 (+)
G38687 NA non-coding upstream 263286 1498168 ~ 1521254 (+)
G38681 NA non-coding upstream 305401 1478557 ~ 1479139 (+)
G38676 NA non-coding upstream 320103 1462462 ~ 1464437 (+)
G38721 NA non-coding downstream 83 1806634 ~ 1814009 (+)
G38758 NA non-coding downstream 115287 1921838 ~ 1975630 (+)
G38759 NA non-coding downstream 118773 1925324 ~ 1928330 (+)
G38756 NA non-coding downstream 133429 1939980 ~ 1941750 (+)
G38761 NA non-coding downstream 135294 1941845 ~ 1966544 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 559939 1194219 ~ 1224601 (+)
trmo trmo other upstream 595946 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 642606 1102778 ~ 1141934 (+)
G38577 NA other upstream 719209 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 1039541 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 177096 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 218937 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2025316 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2857765 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3457031 5263582 ~ 5357860 (+)

Expression


Co-expression Network