snapc3 (snapc3)


Basic Information

Item Value
gene id snapc3
gene name snapc3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1810150 ~ 1820845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302862.1
GAGGCGGAAGTAAACATGGCTGAAGGCGGCGGTACGAACGTATTGGACGAAAACGTGCCGGTTTATGAACACGTCGAAGTGAACTCCAAGCCATTTCACCTCGGTAGCTTTAGAGATTTATGGCTCAGCGTGCTGAAACCGGAAGATTACTCTTTTAGCCAGACTTCCGGTGAAATAGAAGAAGCGCAGTTTATAGAGGAGATGGGAATCACACCGGAAACGCTGGAGGAGCTTAAAACCATCTGCAGcccTGATTCTCTTCGCTGTCACGCTGAAGATGAAGCTCCTGATCCTGACGTGGTTCCTGCAGACCCTCAGCTCGCCACGTTAAAACTGAGGAAGAGGAGACTGGACTATAAGAAGACTCTCATACGGGACAACGTGGGACGACACGACGCGTACGCTAATGAGATgGAAATGCTCTCTCTGGGCAGAAGAGCTGAAGACGCCTCAGACACCGTTCCCGAGGGAGAACTCGTCCTCACCTTCAACGTCATCTACCCCGTCCTGTTTGAGCGAtttaaaCACGTGAGGGCGTATCAGACGCTGCATGTTCTGGGCTCGCAGAAGCTCACCGAGCTCAGAGACGCCATCTGCTGTGTGAGCGACCTGCAAGTGTTCGGAGAGTTCAGTAACACACCTGACATGGTGCCTCAGTTCATCAGcaagGATCACTACAAATCCGCGTTCTTCTTCTTCGAGGGAATTTTCTACAACGACATGCGCTTCCCCGAGTGTCGCGATATCAGCGCGGTGACGCGTGAGTGGACCAAAAGCAGAGACTTCCCCGAGTTTAAAACGGCTAAGATGGAGGAGGCGACGTTCAGTGAGCTGAGGGTGAAGGTGGGATTTCCGTACCTGTACTGCCATCAGGGAGACTGTGAACACGTCCTCATCCTCACAGACATCAGgcTGATCCATAAGGACGACTGCTTAGACAGGAAGTTGTATCCACTGCTGTCACACAAGCACAGGGTCGTGACCCGGAAGTGCTGCGTGTGTCACCTGTACATCAGCAGATGGATAACGACGAACGACGCTCTTGCTCCGATGGATCCGTGTCTGTACTGTGATCAGTGTTTCCGTCTGCTGCATTACGACCAACATGGCAACAAGCTGGGCGACTTCCAGGCGTACGCTTACGTCGACCCCGGAGCGTTCAACTGAGCGCGctccacactccacactccacactccaaATCTGCTGCTTTACTTCTTaccttgtatttttttgtataaacaTTTGTACGTTTATTTTCCTCGGTGTTTACTTGTAGCCAggaatctttttgtttttgacaaaatgatCATTTGTTGATGTTCAACATTTCGAGagttatttgaatttaaaagcTAAAGCAGTGCTGTAAATAACATGTTCCTGTTCACGTCTCTAAAATAAAGTTTGGTTGTGTATCGCGA

Function

symbol description
snapc3 Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC3 (small nuclear RNA activating complex polypeptide 3).

NR:

description
PREDICTED: snRNA-activating protein complex subunit 3

GO: NA

KEGG:

id description
K15210 SNAPC3; snRNA-activating protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302862.1 True 1422 mRNA 0.50 10 1810150 1820845

Neighbor

gene id symbol gene type direction distance location
anp32b anp32b coding downstream 656800 1146129 ~ 1153350 (-)
ints12 ints12 coding downstream 740335 1065387 ~ 1069815 (-)
ppa2 ppa2,LOC108414713 coding downstream 872701 925951 ~ 937449 (-)
cxxc4 cxxc4 coding downstream 938797 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 1054343 746338 ~ 755807 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 72741 1893586 ~ 1895099 (-)
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding upstream 126530 1947375 ~ 1964907 (-)
aip aip,LOC106609959 coding upstream 180604 2001449 ~ 2007253 (-)
sod3b sod3 coding upstream 187064 2007909 ~ 2011692 (-)
irf2a LOC108263359,LOC108434128 coding upstream 305973 2126818 ~ 2143166 (-)
LOC117596905 NA non-coding downstream 119156 1686729 ~ 1690994 (-)
G39533 NA non-coding downstream 130347 1583988 ~ 1679803 (-)
G39412 NA non-coding downstream 175185 1217287 ~ 1634965 (-)
G39521 NA non-coding downstream 253605 1555728 ~ 1556545 (-)
G39484 NA non-coding downstream 314084 1494621 ~ 1496066 (-)
G39570 NA non-coding upstream 3003 1823848 ~ 1824596 (-)
G39589 NA non-coding upstream 23920 1844765 ~ 1846362 (-)
G39596 NA non-coding upstream 31168 1852013 ~ 1853638 (-)
G39624 LOC108263251,LOC108434122,LOC107559642,LOC107737095,LOC107674247 non-coding upstream 117835 1938680 ~ 1941748 (-)
G39627 NA non-coding upstream 140923 1961768 ~ 2012888 (-)
cntln cntln,LOC108263774 other downstream 441138 1270445 ~ 1369012 (-)
LOC113524614 NA other downstream 803100 1004477 ~ 1007050 (-)
G38400 NA other downstream 1494622 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 1542335 221729 ~ 267815 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 51088 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 148918 1969763 ~ 1979549 (-)
G39720 NA other upstream 352513 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 399302 2220147 ~ 2984203 (-)
trnae-uuc NA other upstream 1211887 3032732 ~ 3032803 (-)

Expression


Co-expression Network