LOC117596857 (pla2g12a,LOC108263807)


Basic Information

Item Value
gene id LOC117596857
gene name pla2g12a,LOC108263807
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1848225 ~ 1853432 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302868.1
ACACATcgagatgtaaatatcaggaaatgaaagctgaagttCTGATCCTTGCTGTTCAGGGAGACTGTATATCATTTTAGATTGGATCAGGAACCTGTGCGTGAGAGCGCGCGCTTGCGCTGTAGGACGCGATTGCGTCATTCGGAACGCGACGGCTCGCGTTTGTTTTCTAAAGTGAGACCCGGAAGTGGACTGGGCTGCCCCGGTGAGTCACAGGAGACGGACGGACTTTGGCTGCTTATGCGCTCAGGTGGAGGGAAAGATGACTCACAGCGTCCATCTGCCACCTTTAACGCCTCACAGGATCTCTAACTAACTCCGAAATCTTTACCGAGTAATCGgaataatcagaataaagagagagagagagagagagagagagagaatgcagcagcagcagcagctcagtgTCCCATCAGctgtcctgctcctgctcctgctcctgctctgtgGCCCAGCTGTGTCCAGTGCAGGACTGGGGGAGTCTGAACCCGAGACCCCGGACTGGAGGAAGACTTTAAAAACCATCCGCAATGGAATCCACAAGATAGACACATATCTGAACTATGCTCTGGATTTAATCGGAGGATCTGATGGACTGTGTCAGTTCAAATGCTCTGATGGATACAAACCCATTCCCAGACCTCATTACAAACACTCTCCGCCCAACGGATGCGGCTCTCCGCTGTTCGGATTTCACTTTGATATCGGGATTCCCTCTATGACGAGATGCTGTAATCAGCACGACCGCTGCTATGATACGTGTGGACGAGAGAAACACGACTGTGATGATCAGTTCCAAGTTTGCTTGGAGACCATCTGTAGGAATGTACAGACCACACTGGGACTGGACCAGAGCGTACAAGCGTGTGAATCGGCGGTGACTCTGCTCTTCGATGCCGTCATGCACCTGGGCTGTAAACCCTACCTGGACAGCCAGAGAGCTGCGTGTATCTGCCGCTACGAGGACAAAACTGACCTGTGATCAGCTGCGTTCAGGCTCCGAGAAATCCTGACGCCTTTGAGGAACATCTAAAGAGTCAAAACTCCGCCCTCGAAGTCTGCAGCACTGCGCAGTTTAATGTTTTCCCTCGTTTTAAAGGTGCCATGTGtgatgtttaaaagtgtttctagacctgtaataatcaaataatatgAAAGATACTTCAGAGAAACTATGGTTCATAATATTGCTATGCAGTGCATCCTGCTAGCTTTCAAGTTTATGCTTTTCcggccctgaaattagctccaTCCCCAATCAAAATCAGAGCTGCTCAGCTGtggcttttttctttaaatggtGCCTGATGAAGCTTACGTGCTTTCACCAGTTTTTGTCtgaagagacagaagagaaaagtttgtcagtttttttaatcattgcaGTTGCAGTTCACTTTACAGACAGCAGAGGGTGCCAAAACTTACTGCGCCTTTAATTCTCCTGATTCACTTCATTATCAAGTCATGTACAGCATGAATCGGATGTTTTGGAGGAAACAGTAGTCTGTTCCAGTTTAGGTCTCGGAGTAAATGAGGCTTCATCCCAAACACTGAGGCTCTTCACTAATCAGTGCTCTAACTGAAAGCCTCAGCCACTGGacgagatttattttttattcttttctggAAACCCGACATCATCCCAAACCAGACAAGCTTTTAAAGTCTCCTGACTGTGACTGTTTTTAATCAGGCCTTAATGTGTCTCAGGGATGAGAAAAGTTCACTATGcacgtgttttgtgtttgttctgtgCTTTATGGAGTTGATATGATATCAGAAATCAGACACAGTGACAAACTCAGAATCTtgtaaatctgtaactttaaatctgtaacaaatttttatttcctcttctaACGGGACAGTTTTTTCTTTACTCACAATTTGTTTGTACTTTACATCTGTTGGAGtcttagccccgccccctttctcTCTAATGCTGGGCTCTTAGCCCCGCCCCATCTTCACTCTAATTGTGGGCTcttagccccgccccttttctCTCCAATGCTGTGCCCAAcattagagagagaggggcGGGCTAAGAGCCCAACAACTAAGTGCCCACAACTAAGTGCCCTAGCCCCGGCCCAATCTTCTCTCTGATGCTGGGCTCTTAGTCCCACCCCT

Function

symbol description
pla2g12a Predicted to enable phospholipase A2 activity. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Orthologous to human PLA2G12A (phospholipase A2 group XIIA).

NR:

description
PREDICTED: group XIIA secretory phospholipase A2-like

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302868.1 True 2139 mRNA 0.47 4 1848225 1853432

Neighbor

gene id symbol gene type direction distance location
dnajb14 dnajb14 coding upstream 812 1822256 ~ 1847413 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding upstream 41674 1784540 ~ 1806551 (+)
bnc2 bnc2,LOC107595060 coding upstream 264303 1394197 ~ 1583922 (+)
foxe1 foxe1 coding upstream 590269 1249073 ~ 1257956 (+)
spag5 spag5 coding upstream 656979 1179478 ~ 1191246 (+)
LOC113524724 LOC104953273 coding downstream 3089 1856521 ~ 1860800 (+)
LOC113524707 LOC108263800 coding downstream 10783 1864215 ~ 1872988 (+)
si:ch211-113e8.10 zfp91,LOC107674257,LOC107737094 coding downstream 27898 1881330 ~ 1891816 (+)
cntf NA coding downstream 45359 1898791 ~ 1907652 (+)
si:dkey-117m1.4 si:dkey-117m1.4,LOC108263251,LOC108434122,LOC107559642,LOC107748830,LOC107671095 coding downstream 66730 1920162 ~ 1939926 (+)
G38721 NA non-coding upstream 34216 1806634 ~ 1814009 (+)
G38709 NA non-coding upstream 83872 1763871 ~ 1764353 (+)
G38687 NA non-coding upstream 326971 1498168 ~ 1521254 (+)
G38681 NA non-coding upstream 369086 1478557 ~ 1479139 (+)
G38676 NA non-coding upstream 383788 1462462 ~ 1464437 (+)
G38758 NA non-coding downstream 68406 1921838 ~ 1975630 (+)
G38759 NA non-coding downstream 71892 1925324 ~ 1928330 (+)
G38756 NA non-coding downstream 86548 1939980 ~ 1941750 (+)
G38761 NA non-coding downstream 88413 1941845 ~ 1966544 (+)
G38796 NA non-coding downstream 202219 2055651 ~ 2056825 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 623624 1194219 ~ 1224601 (+)
trmo trmo other upstream 659631 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 706291 1102778 ~ 1141934 (+)
G38577 NA other upstream 782894 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 1103226 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 130215 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 172056 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 1978435 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2810884 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3410150 5263582 ~ 5357860 (+)

Expression


Co-expression Network