LOC113542004 (LOC108263504,LOC108263505,LOC108263506)


Basic Information

Item Value
gene id LOC113542004
gene name LOC108263504,LOC108263505,LOC108263506
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7343286 ~ 7346567 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302876.1
CATTCAGGGAAAACCAAACTGAGCCTCTGAGAGACAGTGTGCTCCACACAGCTGAGAGCCTCCGAGATCCACGAGCACAATGGCAGTTTCCAAAAGTGAGCTCACAGGACAATTAAAGAAGTACAAGACCTGGCTGCTTTCGCCTAAACTGTTGGGATGTTTGGTGGTTGTGGCAGCTTTTGGGATTCAGATTTTTAAGCAACAGAGCAGCTCTTCGAGTGAGCAAgTACAAGAATTCAGTGATGAGCTTCGGATCCTGCTAATCGGAAAGACAGGTGTGGGCAAGAGCGCAACAGGAAACACCATTCTTGGAAAAAAGGCTTTTAAATCTGAGATCTCCTCTTCATCTGTAACCACATGGTGCGACAAAGCCCATGGAAGTGTACATGGCAGAAAAGTGTCTGTTATTGACTCTCCAGGCCTGTTTGACACTCACTTAACTGCAGAAGAGGTGGTCAATCGGATTAAGCTGTGCATTCCATTCTCTGCTCCAGGACCTCATGTCTTTTTAGTTGTGATTCAAATAGGTAGATTTacagaggaagaagaacaaACAGTTAAGATATTTCAAGCAATTTTTGGGGAAAAGTCATCCAGTTACACTATGGCTCTCTTCACTCATGGAGATCAACTGAAGGGGAAAAATATTCATCAATTTGTACGCAACAACACAAAGCTTTTGAGTTTCATCAGGAAATGCAATGGTGGATACCATGTGTTCAATAATGAAGATCAGAATCCAGAACAAGTCATCCAGCTCCTGGACCAGATTGATAAGATGGTCACTGTAAATGGTGGAGAACATTACACTACAGAGATGCTTCAGGAGGCCGAGAGAGCGATAGAAGAAGAGAAACAGCGGATCCTGAAAGAAAACGAAgcacagagacagaaggagataGACGTGCTTAGGGTGATGTTTGAAGGAGAAGACTTtacgagagagaaaaagaagaaaactgaGCAACATGAAGAGGAAGCAAGAGAAAAGGCTGAAAAACGTTACTCttattttgaaaacttttttcagattttaattGACATTATATTGCGATTTTTAGGGATCAGACCACCAGCCCACATTTCAAATTTCCACTTTAGTAATTTCCATGGCAGTTTAAAATAATTACCCACTAAAGTTTCTACACTAGTGATTTTAAAATCACTCCAGAATCAGTACCTGACCAGAATAACATCATCACAAATAGGTCTGAGTTCTTAAAACCCCCTTTATAGTGATATGCACTTCCACAAGGGGCtatttgcttttataaaatggtgccaaaaatttaaattattattagtaatatttgTTATAAACAATTCTTCCACCATTCAATGTGGCCATGTCAACCAGGCGTTACTGTCAACCCTCTCAACAGATATAATGTTAGGAGTATAAGTAAAAAATAAGCTTTGCTTTCTAAGCAACAGGAAGATTAGAATTCTACAGACAGAATAATGGCTTAAATATaacagttttattgtttaaaacctggtgcattaatacaaaattCAATTATTGTGATGCATTCACAGGTGTGAGTATATCAAGGATTTAACAAAATGGAtctgttgtagaaaattcatatttacacatgaggctgatgcttttatctaaAGCAACTGACTGAtgggatacaactgagcagatgAGTACTAAGCACCTCATTTCACTTTGTTGGTGCTGgaatttaaacacacaacctCACTCCCTGACTTCTCTACCTACCTGTTGTAATGGGCAGATTTGAACCTACCTAGAACCTGCCTCATTTATGAGTGCTTCTTTAAGGACTTGTCTGGTTTCCTGGCCATTTTCCTTTAAGGTTTCTCAAGGTCCTTCACCTCAAGGACTCTATCATTTATGTTCTTCTTCCCCACTTTCTTAAGATTAAGTATCTATGTTGTACTGACTTGCTTAGTCTTGTATCTTCTATCAAGGAGTtgtatttttgtcattaaaCTTCCTACATTTGCCTCAGCTTTAagtaatctctctctcatcatctgCCTCCCCTTTGCGACaattaaactattttaaatattttattcattaacctGTTTTGCAATTGTCAGAAATTTACTTAGATTTGTGATCcgtttctgtctcttttatttttaattgttttagtGACATGGCACCTTGGCCTTAATGTGTTTTCCCAAgacttgaataaataaattcatgtaCCTTAA

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302876.1 True 2199 mRNA 0.38 4 7343286 7346567

Neighbor

gene id symbol gene type direction distance location
LOC113541438 mcub,LOC108262756 coding upstream 27824 7291721 ~ 7315462 (+)
hadh hadh,LOC107594428 coding upstream 187786 7150285 ~ 7155500 (+)
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding upstream 194161 7142438 ~ 7149125 (+)
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding upstream 202376 7126787 ~ 7140910 (+)
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 425631 6844872 ~ 6917655 (+)
LOC113541239 NA coding downstream 7501 7354068 ~ 7356693 (+)
LOC117596353 LOC108263508 coding downstream 10167 7356734 ~ 7358561 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding downstream 37505 7384072 ~ 7393247 (+)
LOC113543274 LOC108263610 coding downstream 49858 7396425 ~ 7408116 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding downstream 66941 7413508 ~ 7420929 (+)
G41951 NA non-coding upstream 326361 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 374447 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 640480 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 741123 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 744319 6598703 ~ 6598967 (+)
G42093 NA non-coding downstream 1592 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 14633 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 75524 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 126803 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 294368 7640935 ~ 7644922 (+)
G42075 NA other upstream 122263 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1114601 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1985426 5263582 ~ 5357860 (+)
G41047 NA other upstream 2001536 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2571682 4664316 ~ 4771604 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 273978 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 302631 7649198 ~ 7671410 (+)
G42685 NA other downstream 1119180 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1123057 8469624 ~ 8469881 (+)
sprn sprn other downstream 3205692 10552259 ~ 10558295 (+)

Expression


Co-expression Network