LOC113542239 (rmdn2,LOC107747293,LOC107665610)


Basic Information

Item Value
gene id LOC113542239
gene name rmdn2,LOC107747293,LOC107665610
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10684500 ~ 10723757 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302893.1
AAGACACCATGGTTCAAGGTTGATCAGATTATACATGTATCAGCCACAGTCCAGCACAGTGAGCTGCTCAGGGATAACAGATATCACAACACAACCACACTCCTCTGCTTAATTCAAGTAACCAGgtttaaaaagaacattttcatgGATACAGGGTCTCGAATGCTGCATTTTTTACTGATGGCTCAGGATGGCAAGGTCCTGGCTCTGGGAGTTCTGGCTGGTGCTGCAGGGATCAGTTTGGCAGCTTTTTGGTACCAGAGCCGGAGAACCATGGTGGGGGCAGCAGGGGCAAGTACCTATTATCTGTCAAGCAGCAGAAACACAGACCAGCTTGGAGGCGGTGTGGCATTGCAAGCAGGCCAGACGGAGGTGCTGGATCGGCTCGGAGCTCTGattcagtgtgtgtcagagctaAAAGAGGAGGTGAAGGCCCTGAAGAATGCTCTTCCACACTTGCAGGACCACATCAGAGATGAGTTAACAGGGCGGAGTCGCAAGGCAAGTCCACTGAATAGAACCACGCCCACAAGGAGGAAGAGAGCCAGCGGAGTGGCCAGAGCACAGGGGCAGAGCTCAGAGGAAGCAGAAAGTGAAGGAGGGtatattacagcaCTGACGGACACTGAAGAGGAGGGTGAGAGTGAAGAGGATCGCAAAGTTGTAGAGCCTCTGGATGAGCTCACCGTCCTGTTACAGAGAGCAGATCGGCTGCATGATTGTAACAGCGCTAAAGAAGAAGGCTTGTCCACTCTGCTGGAGAGGAAGGAAGAGTATGATCAGAAGTGGCAGTACCTGTGGCGGTTAACCAGAGCCTATGCTGATGCTCATGATATGGCTGGAGACCttgaagagaagaagagataTGCTGAAACAGGGAAGCAAATTGGAGAACAAGCCATTTCAGTGAATCCCATGTGTGCTGAAAGTCATCAGTGGTATGCTATTCTATGTGGACTTCTGTCAGAATATGAATCTGTCCAGAATAAGATAAAGAATGGCTACCTTTTCAAGGATCATTTGGATAAAGCCATTGAGCTGAAGCCGCAGGATCCGCAGTCTTATTACCTGCTGGGCCGCTGGTGCTATGCTGTGGCCCAGTGTACATGGATTGAGAGGAAAATTGCTGCTACGTTGTTTGGAGAGCCTCCGAGCGCAACAGTCCATGATGCCCTGCAGAACTTCCTCAAGGCAGAGGAGATCTGTCCAAAATACTCTAAATACAACTATGTGTTTTTAGCAAAGTGCTATAAAGACCTGGGCCAGAAGAACCAAGCCAAGATGATGTGTGATGCTGGATCTGATATGAAAACAATAACTAAAGACGACGAGGAAGCACAAAAGGAGCTGGACTCTATTCTCTTGTCACTTTAGTCAGAAACAGACTCTTCATGTCTCCGCTACTTTTAGGGCACAGTTGTGTTGATAGACTCGAGTTGTGACCGTATGActgttattttgactttttctcatttttctgctGAATGTAGATGACTATTAACATTATTGACAACTGAACTTTGACCAGCGAACATCTGCAGCATGACATATGCCACACTATGAGGCAACATGTCATGCTTCAAATTATCACAGATCGAAGTTCACTTGTGACCATATGACTGTTATTTTGACATTCTCTCATCTCTATGCTGACTGCAGACTCTCAACATTAAGGACAACTGAACTTTAATCAGTGATAATCTGGAGCATGATTTCTTGCCTCACAGTTTGTGACATATCATGTTCGCACAAAAGTCATAAATTAAAAGATTTCCTAACTTAATTTTAGTACCCTTAGAGttgtggacaaatcataaattcctTCGCTAGCCCACCATAAGAAAAAGCTGTActgtaaaaggataaaaataggagctagttagctaggtatatacattaatacagactaaaggaAACAAACGAAATTATTATCTTCTTATAATAAAGTGTCTAATGTAGCACACCTTGCTTGCACCCTCAACACAAAATACTAGGCCATGAGATGTAGCGTTCTCCCATGGCATTCACCTTAAAATTAGAGTCTAGCTtcattatttgcatttgcatctTGCAAGTTGGAGAGCTGTATGAAGGCTTTGTGCTGAATTTTATGTTGCTTGGTTTTGTTACTATTTCTACATACCTGTGTGGTTCTGATTCAGAAAAGATcgccatccatccatgcattaATCCTCATAGTAAAAACCACCTAGTAAAGATCAGCTAGATCACGTCtccatcagtgtgtgtggtgcagcaggtggcAGGATTTGGACGTATgcgctatagttacagcatcgaGGCTTGTCACAACACCGTTGTGTGTGTTAAGGACAAACATagctacataccaaatgaaacttttgttttgtgaaagtcaatAAGGGAtaggttttttctttctctggttgctGAAACCACTTGTCTGCTGAATACCTGGGATCAGTAGCCCAGGCTAATGATTTGTCCACACTACCCCTCCCATATTCACATTAGACCCTTTTACCCGTTCCAAACACAGCACTGCATTTAGTCAGTTACAGTctacttttgtgtttttactaCAGACCTACACAACACCAGAAGATTAATAGAACACTAATACCATGGCAAGGTACCTTTTCTCTTCCCCCTTTTCTTGACTTCATGGCCAGTGTTTAGTGCAATTTTCACTACGGTTccacacagttaaaaaaaaaaaaaaaaactctaacgGTTGTTTTTATTCCTTGGGAGAATATAAGATTTATTTGGGAGTATATCAGTATATGAGATCTGTACTGATTTTGGTGGACTAGTGGCTATTATGTGCCGCTCTCACCTATCCTGATCAGGGAACCTATCCCAGCCATTGGAGGGTTGTACGAGCCAGTGCACTCTCGGTGCCTGTCCCAAGCCCGAaaaatggggagggttgtgacaggaagggcatctggcataaaacttATGCCAGAATCAGAATATATGGATGAGTGATCCTCTATGGCGGTCCtgaatgggagcagctgaaagagggggaaaaaaattagatCTGTTttgcagattttcattttttaatgtttttgtttccaCAATTGTACATGTATCTACATCATTGTTTAAGCAAACTGATTACTGAGTCAAGAAAATGCTGACATCTTATTTTGGTTTTGCTTTTCTTGTAACAGGAAGGTGCTGGTTCATAGTATTTATACACAGTAATAATTTTAGCTTTGACCTGTAAAAAATTGATGCTATCATGTTTTAGCCTGTTTCACTGCACAAAATCGGGGGTGGAGGGAATTGTTTCCAAAAGTCTTTTTGATCATTGTATACTTCATGTGCAgtgttatgttttaaaatagaaattctacatataaacatataatgcATAATCATTCTTGACAGAGGTATTATTGCTtcaaaatgtgttgaaatttattaaaatcataaaatgtgaaatctgtGGAAGTTTTGGACATTGATAAAATGCTGCTGCTCTTGATTTGGAGACTCTTTGTACCTAAATATGAAGGATATCATATATGGTCCCAGTTCTTAGTATAGGCATATGttaatgtataaatgttaaCATAAATATGTTAATGTAGGTTAATATAGCCAGTCCCCTATGCATATGCCTTTTTACAACTAGTCAATTCCACTAAAAGAACAGATGTAAAAAGAATGCAGGCTTCTTCTGAAAACCGAAAGTTACATACGCTTTTCACAGAATAAACTTGCACACactttacagaaaaattaatCACTGATATTTACAGCATTATGGCATTCAATTATCAAGTGTAATGAACTAGAACCAATACTAgaattctattttttatttaaaatatatattttgattttaaattttaaaaccaTTTGTACCCGAACATTCCCACAGCCTCTATTTTGGAAACtggtgttttaaaatgtattgtttaaatAGTGCACATGAAATTTGTATGAGGATgattacttacttttttttctgtttttgtataaTATGTTTCAGCTTTACCAAAGAAAGTGAGGAGtgtatgtcatgttttttttttttgtttgttttttttttttttgttgttgttgtcattgttgttgttgttaagtGTGGTTTGCATTCCAGCAACAGCAATGTATTATTCATTGTAGATTATTCTGTAGGAACTCTGGAATATTATATGTAATCTGTGAAACAGTAGCAGCCCATATTGTTGAGTTACCCACATAACTGAGAATTGTCCACATAATAATTGTACAGAATATAGGTATATTCTGAATATTGCTATATTACAATGCTATTCATTGCATTGAACTTCCCAATGTGTTTTGGTATAAATGTGATGTGATTAGGATGTATAATATATGACCCTCACTAAATTGGTAAAATATGTCTGTGACTTCTTCTCTCTATAACATCCAGGACTGAGACTGGTAACCAGTTTGAGTCATTTGCAATCAGTTGTCTTgatgaaaacaataaataagCTCTTTCCTCCCCCCAGTAGGAAGGCCTGATGTATGTCTCTTGCAAAACGGAATTGTTTGAAGCTGGTTATGGAAATCAAGAATAAGctgaaaataatacacagaaACTAATGCA

Function

symbol description
rmdn2 Enables microtubule binding activity. Located in Golgi apparatus; cytosol; and spindle.

NR:

description
PREDICTED: regulator of microtubule dynamics protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302893.1 True 4582 mRNA 0.40 13 10684500 10723757

Neighbor

gene id symbol gene type direction distance location
dna2 dna2,LOC107743557,LOC108261390 coding upstream 96385 10573152 ~ 10588115 (+)
si:dkey-191g9.7 LOC108263628 coding upstream 134309 10542610 ~ 10550191 (+)
si:dkey-191g9.5 LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575 coding upstream 144460 10528377 ~ 10540040 (+)
mmrn2a NA coding upstream 649110 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 690110 9976131 ~ 9994390 (+)
nanp nanp coding downstream 59349 10783106 ~ 10785648 (+)
LOC113538283 abhd12 coding downstream 78410 10802167 ~ 10816200 (+)
LOC113537521 abhd12 coding downstream 93085 10816842 ~ 10824656 (+)
tm9sf3 tm9sf3,tm9s3 coding downstream 101465 10825222 ~ 10844291 (+)
sfxn4 sfxn4 coding downstream 125978 10849735 ~ 10856137 (+)
G44060 opn3 non-coding upstream 68914 10615146 ~ 10615586 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 72694 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 123977 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 167614 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 361236 10318421 ~ 10323264 (+)
G44182 NA non-coding downstream 251085 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 279403 11003160 ~ 11004990 (+)
G44222 NA non-coding downstream 329818 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 330321 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 573735 11297492 ~ 11297714 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 75796 10594574 ~ 10608704 (+)
sprn sprn other upstream 126205 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2214619 8469624 ~ 8469881 (+)
G42685 NA other upstream 2218188 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3013090 7649198 ~ 7671410 (+)
dntt dntt other downstream 375836 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 959107 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 983178 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 1021991 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1912563 12636320 ~ 12636406 (+)

Expression


Co-expression Network