sema4ga (LOC108263187,LOC108441763)


Basic Information

Item Value
gene id sema4ga
gene name LOC108263187,LOC108441763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19138495 ~ 19171153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302895.1
TGCGGAAGTGGCCGTTGCGTAGGAGGGCGTGGCTTATCTACCTGAGCGAGTAAACGTTTACGCCTGAAGCTAAACTGCTCCTAGTCAACAGGATCTCCTTTCTGTGTACTGTATGGCCTGTGAAAAATAATGGTCACACTAGATAGCGCACTTTGCGTCCAATAGGAAGGCGTTTgggttagagagagagagagagagagagggagagagagagagagagagagagagagagagaggagagcttCAGCTTGAGACGCATCGCAGTTTGAGTTTCTCTGTTCAAATCTCAGGAGCTTTATTTTAGtgtggactttttttttgctccagaATTGAAGagtgaaaacaaaactgaaccACAGCAAGgtCAAGTGTCCAGAAGCATGATGAGGTAGTTAGGATTGCTGGGACCTTGTTGTGGAGGCAAGATACAAGATTACTGAGTGCGTATTTGTGTGAGAGTGTTGTCCTGTTCTGCTGAAGGGGGAGAGTGTGGATTTGAGGTGCTCACCTCTCCTGGGTGAAACGAGTGGCGATGAGGATGAGAAGCAACGTGGGATGGCTGTATTGCCTGCAACTGCTGTGTGCTATGTCTACACTGAGGGCTTATCCCTTCACACCTCCTCTGGACCTGGATGTCACTCCCAGAACTACGGTCCTTTTCAATGAGTTGTGGGGGTGCAGACGCTTCAGTGGCTCTGCTCTGAACTACAGCACCCTGCTGCTGGAGGAGGAGCCAGGTTTGCTGTATGTGGGAGCTAGAGGAGCACTGTATGCCCTGCAGGCTTCTAATATCTCCAGCTCCAGTCACACAATTGACTGGGAGGCACCTGAAGACCGGAAGCAGCTCTGTCTGAACAAAGGGAAAGATAACAAGactgaatgttttaatcacatCCGATTCCTGCAGAGATTCAACAGCACCCACTTATATACTTGTGGAACTCATGCGTTTAGCCCACAGTGTGCATATATTGATAGTAGGGAgtttaaaatgtcttcagtgaTTGAGGAGGGTCGAGAAAGGTGCCCTTATGACCCTGCTAAAGGCTACACAGGCCTGCTTATTGATGGTCAAATGTACACGGCTTCTCAGTATGAGTTCTGGAGTTCTCCAGACATTCGTAGGAACTCTCCGAACCCCATGCTGAGAACAGAGGAAGCCCCCACTCGCTGGCTTTATGAGGCTGATTTTGTGGAGTCGGCGCTGGTGAAGGAGAGTGTGAATAGCTCTGTCGGAGATGACGATAAAATCTATTTCTTCTTCACGGAGAAGAGTCAGGAACACAGTCTGTACTTCAGCTACGGCAGGGTGGCCCGTGTGGCCCGTGTGTGTAAGAGCGACAGAGGTGGTCTCCTGACCCTGCAAAAGAAGTGGACGTCCTTCCTGAAGGCTCGGTTGGTCTGCTCGCTGCCTGACTATAAGTTCCACTTTAATGTTTTGCGCAGCATGTTTGTGTTGGAGGGCCCCAGGACTGAGGACACTATGCTGTATGGCATCTTTGGTTTGGAATGgAAAAACGTCAAAGCTTCGGCCATCTGCCGCTACTCAATCAAAGACGTCCAGCAGGTCTTTGAAGGGCCCTACATGGAAAATCAGGAGGACGCTGGCGCCAAACTGACTGAGTACACGGGGAAGGTGCCTGATCCGAGACCTGGCTCGTGCATCACAGATCGACTCAGGGAAAGAAACATCAACTTCTCCACTGACCTGCCGGATGATGTGCTGCATTTTGTACGACGTCATCCACTAATGTCTCGACAGATTCTCCCTCTAGGACAACGTCCCCTGCTGTTTCGGAGGACTGTGGACTACACTAAAATAGTGGTGCACAAAGTGACTGCTCTAGATGGACAGACATACCACATGCTCTTCATTGGGACAGATGAAGGTTGGCTCCAGAGAGCAGTAGAAATTAACGGTCAGCTTCACATTATTGAAGAGCTGCAGCTGTTTGAGGAGCCACAGCCTGTGGACAGTATAGTCATCTCTCAGAAACAGatgagtgtgtatgtgggcTCACCCTCTGGTGTTGTGCAGCTGCCTTTGTCCACATGTCACAGATATACATCCTGCTTTGATTGCGTGTTAGCACGGGACCCTTTCTGTGCTTGGGATGGGGCTGAATGTGTGGAGATCACTTCACACCCAGACAGaTCCAGTCTGACTCAAGACATCCTTAATGGGAATCAAGGCTGTGCAAAATCTGCAGCAGATGaCCTGGCGCTCCATCGCATTCGCTCAGTGGTGGCAGGGGACGACGTGCTTCTGCAATGTGAGCTCAGCTCTAATCTCGCAACCCCGCGGTGGACGAGGAATAAGCAGCAGCTGCAGGGCTATGGGCTGAACTCAGGCTATCGCATTGGCACTGATGGCTTGCTGGTGATTGAGGCAAGACCAGAGCAGAGTGGCAACTATAGCTGCTTCGCCCTGGAGAACGGCGTCCGCATCCATGTAGTGATCTACAAATTGATTGTGCACCAATACCTACCGCCGGCACCCCACTCAACCCTCCAACCCAAAAACTCCAACGACAGCAATCCAGCACCTCTCCCCCCGCAGTTCCAGTCCATGAAGAACATGGAGGCCATGTACATCTCTCTGATCACCATCCTTGGTGGATTGTGCCTGGTCCTGACTGTAGTGCTGCTGTATGTGAGTTTCTGTGTGCAGAGCAAACGGGGGAAGTACTCTCTCCGGGCAGCAGCccaagctgacagaaagaagaagaggaatgaCCGTATGGAGCTGAAGACTATCTCCAGCCACTGTAATGGGAAAGCAAACACTCACGATGGACTGCTACAGATTGTTCCTGGAGAGGCCCAGGTTTCCTCCAATAAAGAGCTTCCTCCTGCACCTCCActccctccacctccaccaaaCTCTGAGCTGGACTACACCAATGGGTTCTCCGCCACACTGCCCAGTGTCTTACGCAAAATGAACGGCAATAGTTACGTATTACTCAGACAAACTGATGGAGACACCACGTCTCCACTGTACTACTCTTTCACCGATGAGCTCAACCAGATTCTGGAAAAGAGGaagcacacacagctgtgtagCAAACCCGATGAGAGTTCAGTATAACACTTCAGAAACAATATGGTACCTGCTTAAAGGTCAGAAAGGATTTTGTTTCAGCTACGGCCTACATTGCATACAAACTGAAATGGATAATAGCCTGGCTGATGAAAGATTCTGTTTCATATTTTCCTGtccagtgacatttttttttttaatcgtctCTTATTTTGAAGAGAAAAGATTCACTGAACATGAAAAACAAGAACAGAACAAAAGTAGTGACACAAACACATAATGCATAATCTACCTCGGAAGATTGTTGCTATAATAATAGCACTGTGTTCCACTGGGAGTGTGAGATGGGAGGTGGTGAGGAACAGCAGGTACTTCAGCACAGAAGTCTGCCTGTGGGGTGAAAGCTTGAATGCTTCACATGAAATACAGAGGAAGAGGTCCGAACAGGAACATGCAGGGTTATGGAATTATTTGTTTCATTGGTTAAAGGAACTGCTGGCTGAAGTctaataatttcagaaaaaaaaaacttttaatctGGATGTGGCTGCTTTTGAGCAATACTGCTGAACTGCactaaatgttgatattttctATTGAGATAATCAGCTATTTATGTCACCACTGACTACACTGATGACTCAACTAACTGCATTTAATGCAACAATGAACACTGAAAGACTTTAACATTATGACTTCAGTTTTTACAGCTTGAtttttgagggggaaaaaaagagtgtgaTAGTATTAATTACTGGGATGCACTTTAAGGGCAAAAGGCATTTGTTGTAAATGATACTTGTTCTGCAAGAGATGGAGCGTGCTCTGAGTATCACAATGGAAGTCCTAGTTTTGTAGGATAAATTGAGGATTCTTCAAAAATCAATACCATTGCTGGGTCAGAGTCAAATGCTTTACTAACCACTAaatgaacatgtttttaaagaaGACACTAATAAGACATTCTACAATTCATAATCCAGACAAAATGAATTGTAAAGAGTAAACCATAATTCTTCTCTGGCTCAGAGCCATTCTTTGTCTGATGTCACTCAGCTTATGACTGAGTGTTGGTGCAGTTCCCATCTGACGTCGCTGGAATTTCTGAAAGACCTACCTGCCAGTTAACCATGACGACAGAGAAGCAGAGGTTTGAAGAACAGTTTGCTGCCGGCTCATGCTTTGCCACAATGGAGGGAATCTCCAATAAGCCAGTGtcagaaaaatgaaacactttaaaaacaatGGACTTTGAGCATCGAGTGATGGATTTATCAATGTGAAATAAAGGAAGCCCaggcattttttaataattgggTAAATAGTTTATAGTCCTGCAGTTCTGTACTACAATGCCTCCCTGAGTTTACAAGAGCAGTCTGAGTAAATCAATCTTAATCTGATCTTTGCCACTCTCCaactttatccatttacagtggGTGTTAAATATGGGCCAGTGTTTATATCAAATTcttgtacattttatattttattatttaatttaattaaacatttgtgCAAGTAATGATGTATGTCcaaagttgttttgtttttttgtttttagttctgTAACATAATTATAACCCTGGCATCAGGTGttctatttattttgaatgCAAGAATTTGCATTTAGGCATCCATCAAGTGCAAACTGTACATCATTTAttcagtaatgaaaaaaaactatatttcaCACTCTCTTGAGAAGATTTTGATTTGGTTGTATGCCTTGTCAGTGGTAGGCAAGAGTATGTAGGCTGTCTCTGGATCTGCACGTAGAAGCAGTTTAGAGTTGTGTCTGGACAAGACTGAGAGAAATTATAGTCGGTGTGTATGGTTCTGACAtgctctcgcgctctctctctctgggaaaCACTCAGTCAcccagagctgtgtgtgtccaGACAGGCCTGCACTCGAATACACAGGCTAAATATGGAAGTGAATATGACTCCAGAGAGAATACCCAGTGTTGCTTTGTGTTTCAGAGCTGATAACACAGTTAACATGTGAGCTGAGGGATGTGTAATGTGAATTAATTGAaagtgtatatttacattttcttctcATTAAATCCCAATCACAGTGTT

Function

NR:

description
PREDICTED: semaphorin-4G-like

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302895.1 True 5133 mRNA 0.45 16 19138495 19171153

Neighbor

gene id symbol gene type direction distance location
lzts2a lzts2 coding downstream 23926 19065033 ~ 19114569 (-)
sfxn3 LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760 coding downstream 94174 19036992 ~ 19044321 (-)
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding downstream 119586 19011981 ~ 19018909 (-)
si:dkey-228d14.5 LOC108262905 coding downstream 234975 18898163 ~ 18903520 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 286388 18845152 ~ 18852107 (-)
slf2 LOC108263189 coding upstream 2087 19173240 ~ 19185983 (-)
wdr32 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687,LOC107582526 coding upstream 31959 19203112 ~ 19214161 (-)
pomk pomk coding upstream 39126 19210279 ~ 19212029 (-)
zgc:123321 yipf7 coding upstream 46461 19217614 ~ 19219603 (-)
alms1 alms1 coding upstream 51273 19222426 ~ 19235665 (-)
G49053 NA non-coding downstream 85744 19052527 ~ 19052751 (-)
G48975 NA non-coding downstream 168699 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 181036 18957157 ~ 18957459 (-)
G48954 NA non-coding downstream 208993 18928182 ~ 18929502 (-)
G48947 NA non-coding downstream 247683 18890563 ~ 18890812 (-)
G49108 NA non-coding upstream 19174 19190327 ~ 19190615 (-)
G49184 NA non-coding upstream 80440 19251593 ~ 19251863 (-)
G49215 NA non-coding upstream 229511 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 256593 19427746 ~ 19428725 (-)
G49481 NA non-coding upstream 517439 19688592 ~ 19688877 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 524974 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1477076 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1564073 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1662403 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 2155766 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 145334 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 443564 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 545447 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1010900 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1053756 20224909 ~ 20256520 (-)

Expression


Co-expression Network