mertka (mertk)


Basic Information

Item Value
gene id mertka
gene name mertk
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25750053 ~ 25770046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302898.1
ACGCAAAGTCGCCAGCACGAGGCAACTTTGACGATGACGATGACGATGGCGGGTGACGTCACGGCGAAGTTAACGCGAGATGGCGCGCGCGACGCTGCAGCGGCGTGAGCAGCTGGACTgagtttgtttgtgtggttttttttttttttttgaacagagCGCTGAAAGCTGCTTACTCCACTGAACCTGTCTGAGAGCAGCTAGCTCCTGCTGTAAGAAAGCGAAGACGTTCATTCCCTACGTTTCATGtcagtgtaaatatgtgtgtctGCTAAGTGGGTTTCTAGAGAAGAGCTGAACTTATTCTGGTGGAGGAAAGCGTCTAATGAAGATGGCTTCAGAGGGTTTCAAGCTGCTCGTCCTTGGATGTTTCTGGTCTTGGGTCTGTTTGACTGGTGGTGGGGAGGCATCTGGTGGTGTGGAACCCTTGGTGGTGCCAGTCCGAGTGCCCAGTGTGCACTTATCTCAGGAGGAGATCCGGAGACTACGCTTCAAACCCACCGTGGGCACCATCCAGTGTTCAGAGGGTTCTGAGGTCACGTTCAACTGCTCCATTGACCTCACTGACATGGGACAGGACCTGAGTATCCTGTGGTTCAAGGATGGCAGAGAGATATTTGATGGCACGCAGACCGCTGTATACAGCCATGGATCAGTAATTCTGCTGTCCACTATCAGTATTAAGAGCGTTCAGCGAGCTGACTCTGGTCAGTACCAGTGCAGACTGAGCGTCAGTAACAAAGTGATCGAGTCAAATCCCATCATCGTTGAGGTTGCTGGTTTACCAACCTTTACTAAACAGCCAAGTGATGTAAATGTTACCAGGAACAGCTCCTTCACGTTGACCTGCGAGGCTGTGGGTCCCCCAAATCCGGTCACAATTATATGGCTTCTTAAAGGCCAGAAGTTAAACCAAACCAGTCCCTCTCCAAGCACCATAACTATCCAAGGTGTGGACTCGCCCACTCAATACAGCTGTGAGGCTCACAATGCCAAAGGAGTCACCGTCTCCAGAGAGGCTCATGTCAACATTAAAGaCTTTCCAGCCAAGGTCTCCAAAATTACCGTGGTGAAACGTGAAGCAAACAAACTCCTCTTAAACTGGACACCTGGACACGATGGCTTTTCCCCACTCAGTACCTGCCACATCACAGTGAGAGAGCTGGGCAGAGAGCTGGGCAACCCTACTAGCGTGCACAAAGTGTCAGTCCCTCCATTTTCGTACGAGATCACTGACCTGAAAGCCATGACCTGGTATAACATGAGTGTGTCCTGCACAAATGAGATTGGCCCCTCGCCACCCAGCTCCTGGGTCCAGAGCAACACTACAGAAGGAGTTCCTTCAGTGGCCCCTCAGAATGTGACCGTTCGTGTAAACGAGACCATGCTCCTGGTACGATGGgaagctcctcctcctgacaAGATAAACGGGATCCTACAAGGATATGATGTCCTTGTTTATGATGGGAAATATGTCAACAAGATTCGCAGTATGTCCACAGAGGCAGCAGTGGCCATGCAGGAGTTTAACACTACATATACTGTGGAAGTGATGGCTTGCACACAAGCTGGCTGTGGAGTTAGAAGCTCTCGTTACCTGTTCTTTGTCCCAGAGATTGATATGCCCTCCCCATCTTCCAGACCTGACACACATGGTTCAGACTCTGTGTACATTGTGTTGGGAGTTGCCTGTGGCGTCTGTCTTGTGCTGATTCTGATGTTTGTAGCTATATGTCTGCGTAGCCGGATATTAGAGACTCAACTAGGGAGGTTGCTTGGAACCGGAGAGAAACTTTCGCCCATCGTCGAGTACAGACCTCAGAGGTCCTACAATCGATCGGCAATTGAAATGACACTATGCTTTGCCCATCTAGTCACAAACTTGGGTGTCAGTGAAGAACTTCAGACCAAACTTCAGGATGTGATGATTTTAAGAAACCTGCTTGCCATCGGAAAGATTCTTGGAGAAGGGGAGTTTGGTTCCGTAATGGAGGGCCACTTAAATTGGCCTGATGGAACGACAGAGAAAGTGGCTGTGAAGACAATGAAATTGGATAATTTCTCTCAGAGGGAGATAGAAGAGTTTCTGAACGAGGCTGCCTGCATGAAGGACTTTAACCACCCTAATGTAATTCGGCTACTAGGTGTATGTTTAGATGTGGGTCCAGGCCACTTCCCCAGGCCAATGGTCATCCTCCCCTTCATGAAGTATGGAGACCTGCATAGCTTTCTTCTTCGCTCCCGGCTTGGAGACAGTCCATTGTATCTCCCAGTACAAACTCTTCTGAGGTTTATGATTGACATTGCTTCGGGAATGGAATACCTCAGCAGCAGAAATTTCCTACATAGAGACCTTGCAGCACGGAATTGCATGTTACGCGACGACATGACTGTGTGCGTGGCAGACTTTGGTCTCTCAAAGAAGATTTACAGTGGAGATTACTATAGACAGGGCAGGATAGCCAAGATGCCTGTGAAATGGATTGCTGTGGAGAGTTTGGCAGACCGAGTCTTCACCGTGAAAAGTGATGTGTGGGCATTTGGGGTAACCATGTGGGAGATAGCTACTCGAGGCATGGCTCCATACCCTGGTGTCCAGAACCATGAGATTTATGACTACCTCTTGGAAGGCCACAGGTTGAAGCAGCCAAATGACTGCTTGGATGAACTgTATACCATCATGTTAAGCTGCTGGCGTGCCAACCCTGTGGACCGGCCTGATTTTACAAAGGTGAAGGCGATGCTGGAGAAGCTGGCAGAGAAGCTTCCTGACAAGAGGGACATCATTTACATCAACACCACTGTctcagaggaggaagaagaaaaggaacaTCTGGCAGAGGTGCCACTGGAGGGCCCTGTCCTCACCTCCTCACCATCCTGCAGCCGCCAGACCATGGACACGTCCATAGTGACAGTGGACGTCCACGAGAGCTCGGCTGCGGATGAAGATGACCGTTACGTTATCGTTGTCCCCTCAGAGGACCCTGGTGCAGTGGGACAGAGCAGTACTGTGGACACTCCACTTTTAGCTGTGGCGAATTTGGAGCAGGACACTGTTGACTCTTCTGGAGATGTAACAGAACTACATCAAGTCTCTAGTGATACAACACATTTACTATGAACTACAAACTACAAAAATAACAGCTACCTTTGTTTTGTCCATGGAAAAAATGATATCTTCCACTACAAATTTCAAATGATTTCTGATTTGATTGAATTATTAAGTACCAGTTTAGAAGCAATGTGTGAAAATATAGATAGAAACATAGATGCTGGTGTGTCTCTGccactgtaaatatatatggcCAGTTTAGTTCaagtttgttgtttttccagtagacattgtcacaaagctgctttacagaaatctgtgtGTAGATCAAGCTGACAtagacagtttaaaaaaaaaaataataatctgtgtCAAGATCAACCTGAGGTAGTCGGAAAACAACCTTCCGGCCAGCACAAGGGAGGCTTTTTATGaggactcaaaaaaaaaaaaaaaaaagtgactccaTCCTTCTCTATTCTAAACAGAATATCAGGTAGATATTTAAGGGTTTGCTGGATTCACTGCAAAGTCAAACTCAAAAATAATGCAGTAGTGTTCTTAGCAGTGTCCTTTTAGCAGAACCTATGTACATAAagttaaatatgtatatttctgCAGTTGGAAATATGATGTCCATGAATAGTCCAGAGGTTTTAAAATTCTATGTATTGCTCTGTGTAACAGGTGTTTTGGAAATTAattgcaaatataaatattttgcttatta
>XM_034302899.1
GCAAAGTCGCCAGCACGAGGCAACTTTGACGATGACGATGACGATGGCGGGTGACGTCACGGCGAAGTTAACGCGAGATGGCGCGCGCGACGCTGCAGCGGCGTGAGCAGCTGGACTgagtttgtttgtgtggttttttttttttttttgaacagagCGCTGAAAGCTGCTTACTCCACTGAACCTGTCTGAGAGCAGCTAGCTCCTGCTGTAAGAAAGCGAAGACGTTCATTCCCTACGTTTCATGtcagtgtaaatatgtgtgtctGCTAAGTGGGTTTCTAGAGAAGAGCTGAACTTATTCTGGTGGAGGAAAGCGTCTAATGAAGATGGCTTCAGAGGGTTTCAAGCTGCTCGTCCTTGGATGTTTCTGGTCTTGGGTCTGTTTGACTGGTGGTGGGGAGGCATCTGGTGGTGTGGAACCCTTGGTGGTGCCAGTCCGAGTGCCCAGTGTGCACTTATCTCAGGAGGAGATCCGGAGACTACGCTTCAAACCCACCGTGGGCACCATCCAGTGTTCAGAGGGTTCTGAGGTCACGTTCAACTGCTCCATTGACCTCACTGACATGGGACAGGACCTGAGTATCCTGTGGTTCAAGGATGGCAGAGAGATATTTGATGGCACGCAGACCGCTGTATACAGCCATGGATCAGTAATTCTGCTGTCCACTATCAGTATTAAGAGCGTTCAGCGAGCTGACTCTGGTCAGTACCAGTGCAGACTGAGCGTCAGTAACAAAGTGATCGAGTCAAATCCCATCATCGTTGAGGTTGCTGGTTTACCAACCTTTACTAAACAGCCAAGTGATGTAAATGTTACCAGGAACAGCTCCTTCACGTTGACCTGCGAGGCTGTGGGTCCCCCAAATCCGGTCACAATTATATGGCTTCTTAAAGGCCAGAAGTTAAACCAAACCAGTCCCTCTCCAAGCACCATAACTATCCAAGGTGTGGACTCGCCCACTCAATACAGCTGTGAGGCTCACAATGCCAAAGGAGTCACCGTCTCCAGAGAGGCTCATGTCAACATTAAAGaCTTTCCAGCCAAGGTCTCCAAAATTACCGTGGTGAAACGTGAAGCAAACAAACTCCTCTTAAACTGGACACCTGGACACGATGGCTTTTCCCCACTCAGTACCTGCCACATCACAGTGAGAGAGCTGGGCAGAGAGCTGGGCAACCCTACTAGCGTGCACAAAGTGTCAGTCCCTCCATTTTCGTACGAGATCACTGACCTGAAAGCCATGACCTGGTATAACATGAGTGTGTCCTGCACAAATGAGATTGGCCCCTCGCCACCCAGCTCCTGGGTCCAGAGCAACACTACAGAAGGAGTTCCTTCAGTGGCCCCTCAGAATGTGACCGTTCGTGTAAACGAGACCATGCTCCTGGTACGATGGgaagctcctcctcctgacaAGATAAACGGGATCCTACAAGGATATGATGTCCTTGTTTATGATGGGAAATATGTCAACAAGATTCGCAGTATGTCCACAGAGGCAGCAGTGGCCATGCAGGAGTTTAACACTACATATACTGTGGAAGTGATGGCTTGCACACAAGCTGGCTGTGGAGTTAGAAGCTCTCGTTACCTGTTCTTTGTCCCAGAGATTGATATGCCCTCCCCATCTTCCAGACCTGACACACATGGTTCAGACTCTGTGTACATTGTGTTGGGAGTTGCCTGTGGCGTCTGTCTTGTGCTGATTCTGATGTTTGTAGCTATATGTCTGCGTAGCCGGATATTAGAGACTCAACTAGGGAGGTTGCTTGGAACCGGAGAGAAACTTTCGCCCATCGTCGAGTACAGACCTCAGAGGTCCTACAATCGATCGGCAATTGAAATGACACTCACAAACTTGGGTGTCAGTGAAGAACTTCAGACCAAACTTCAGGATGTGATGATTTTAAGAAACCTGCTTGCCATCGGAAAGATTCTTGGAGAAGGGGAGTTTGGTTCCGTAATGGAGGGCCACTTAAATTGGCCTGATGGAACGACAGAGAAAGTGGCTGTGAAGACAATGAAATTGGATAATTTCTCTCAGAGGGAGATAGAAGAGTTTCTGAACGAGGCTGCCTGCATGAAGGACTTTAACCACCCTAATGTAATTCGGCTACTAGGTGTATGTTTAGATGTGGGTCCAGGCCACTTCCCCAGGCCAATGGTCATCCTCCCCTTCATGAAGTATGGAGACCTGCATAGCTTTCTTCTTCGCTCCCGGCTTGGAGACAGTCCATTGTATCTCCCAGTACAAACTCTTCTGAGGTTTATGATTGACATTGCTTCGGGAATGGAATACCTCAGCAGCAGAAATTTCCTACATAGAGACCTTGCAGCACGGAATTGCATGTTACGCGACGACATGACTGTGTGCGTGGCAGACTTTGGTCTCTCAAAGAAGATTTACAGTGGAGATTACTATAGACAGGGCAGGATAGCCAAGATGCCTGTGAAATGGATTGCTGTGGAGAGTTTGGCAGACCGAGTCTTCACCGTGAAAAGTGATGTGTGGGCATTTGGGGTAACCATGTGGGAGATAGCTACTCGAGGCATGGCTCCATACCCTGGTGTCCAGAACCATGAGATTTATGACTACCTCTTGGAAGGCCACAGGTTGAAGCAGCCAAATGACTGCTTGGATGAACTgTATACCATCATGTTAAGCTGCTGGCGTGCCAACCCTGTGGACCGGCCTGATTTTACAAAGGTGAAGGCGATGCTGGAGAAGCTGGCAGAGAAGCTTCCTGACAAGAGGGACATCATTTACATCAACACCACTGTctcagaggaggaagaagaaaaggaacaTCTGGCAGAGGTGCCACTGGAGGGCCCTGTCCTCACCTCCTCACCATCCTGCAGCCGCCAGACCATGGACACGTCCATAGTGACAGTGGACGTCCACGAGAGCTCGGCTGCGGATGAAGATGACCGTTACGTTATCGTTGTCCCCTCAGAGGACCCTGGTGCAGTGGGACAGAGCAGTACTGTGGACACTCCACTTTTAGCTGTGGCGAATTTGGAGCAGGACACTGTTGACTCTTCTGGAGATGTAACAGAACTACATCAAGTCTCTAGTGATACAACACATTTACTATGAACTACAAACTACAAAAATAACAGCTACCTTTGTTTTGTCCATGGAAAAAATGATATCTTCCACTACAAATTTCAAATGATTTCTGATTTGATTGAATTATTAAGTACCAGTTTAGAAGCAATGTGTGAAAATATAGATAGAAACATAGATGCTGGTGTGTCTCTGccactgtaaatatatatggcCAGTTTAGTTCaagtttgttgtttttccagtagacattgtcacaaagctgctttacagaaatctgtgtGTAGATCAAGCTGACAtagacagtttaaaaaaaaaaataataatctgtgtCAAGATCAACCTGAGGTAGTCGGAAAACAACCTTCCGGCCAGCACAAGGGAGGCTTTTTATGaggactcaaaaaaaaaaaaaaaaaagtgactccaTCCTTCTCTATTCTAAACAGAATATCAGGTAGATATTTAAGGGTTTGCTGGATTCACTGCAAAGTCAAACTCAAAAATAATGCAGTAGTGTTCTTAGCAGTGTCCTTTTAGCAGAACCTATGTACATAAagttaaatatgtatatttctgCAGTTGGAAATATGATGTCCATGAATAGTCCAGAGGTTTTAAAATTCTATGTATTGCTCTGTGTAACAGGTGTTTTGGAAATTAattgcaaatataaatattttgcttatta

Function

symbol description
mertk Predicted to enable transmembrane receptor protein tyrosine kinase activity. Involved in negative regulation of leukocyte apoptotic process; phagocytosis; and positive regulation of phagocytosis. Located in cytoplasm; extracellular space; and rhabdomere. Implicated in retinitis pigmentosa 38.

NR:

description
tyrosine-protein kinase Mer-like isoform X1

GO: NA

KEGG:

id description
K05117 MERTK, MER; c-mer proto-oncogene tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302898.1 True 3785 mRNA 0.47 19 25750053 25770046
XM_034302899.1 False 3765 mRNA 0.47 19 25750053 25770044

Neighbor

gene id symbol gene type direction distance location
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding downstream 52202 25685684 ~ 25697851 (-)
msh6 msh6 coding downstream 245297 25494676 ~ 25504756 (-)
dnajc12 dnajc12 coding downstream 419851 25308306 ~ 25330202 (-)
LOC113542016 sipa1l2 coding downstream 659231 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 1433625 24190418 ~ 24316428 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 2841 25772887 ~ 25791400 (-)
anapc1 anapc1 coding upstream 152984 25923030 ~ 25966974 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding upstream 231384 26001430 ~ 26011780 (-)
LOC113541884 s39a9 coding upstream 296928 26066974 ~ 26073754 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding upstream 306546 26076592 ~ 26110409 (-)
G52716 NA non-coding downstream 11117 25736578 ~ 25738936 (-)
G52714 NA non-coding downstream 19183 25730445 ~ 25730870 (-)
G52564 NA non-coding downstream 74737 25675076 ~ 25675316 (-)
G52555 NA non-coding downstream 78063 25669966 ~ 25671990 (-)
G52532 NA non-coding downstream 155146 25594236 ~ 25594907 (-)
G52759 NA non-coding upstream 72966 25843012 ~ 25846892 (-)
G52771 NA non-coding upstream 95840 25865886 ~ 25866087 (-)
G52775 NA non-coding upstream 119462 25889508 ~ 25921064 (-)
G52792 NA non-coding upstream 145416 25915462 ~ 25916951 (-)
G52981 NA non-coding upstream 346842 26116888 ~ 26117206 (-)
herc4 herc4,LOC107689351 other downstream 1014165 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1098206 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1617570 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1709953 24016896 ~ 24040100 (-)
G51576 NA other downstream 2295836 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 139972 25910018 ~ 25910119 (-)
dst dst other upstream 1287851 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1767723 27537769 ~ 27541331 (-)
G54269 NA other upstream 2663174 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4109249 29879295 ~ 30111161 (-)

Expression


Co-expression Network