nusap1 (nusap1)


Basic Information

Item Value
gene id nusap1
gene name nusap1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32375964 ~ 32381037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302913.1
TTTGAATTTTTCAACAATCGGGCGCGTGGAAGAGAGTGGCGTGAACAGTTTTTCCTCCGTGAAGATGGATTTAGACTCCATGAAGTATGCAGACCTGCAGCAGCTCGCCAAGAGCGTTGGTTTAAAAGCTAACGTGAAGgCGGATAAGCTGCTGAAGGCGCTGAAGTGGCATTTTGAACAGAAAGAGAGCTTGGAGAATGGAAACGGTGTCACCCCGGAAGACGCGCAGGTCCCAGAGGAGGAAGCAGCCAAGCTGGAACCCGTAAACGACGCGCTGGTGACCACGCGCCGCggaaaaaaacagcaggccAAGAGAAAGTACTCTGGAGACGGAGCTGATCCGAATCCCAAACCGGAAGAAAGCCCAGTTCAGGATGATGCAAAGTCGCCTGGAGAGGAGGAGGACGGAGATAAAAGGAGCTCCAAGAGGAGGAAGGTGTCATCAGCTAAGGACACAGAAACTCCAGCTCCTGAGAAGAAACCCGAGTCTGCTGACGATGATGCTGTCGCTGAGGAGAGcgataaagatgtGGTTAAGAAGACTGGCGGAAAAATCCCTCGTCACGAGGGTCTGATGAAGAAGAAAGCAGCTCTGAGGCCGACCACGCCGAACTTCAAGAAACTCCATGAGGCACACTTCAACAAGATGGAGTCCATCGATTCCTACCTGCAGAGGAGGAACAAGCAGATGGAGGTGCTCAGGGCCTCAGTGAAGGACCTGAAGGCTCAGTCAGAAAACGGTATCAAGAAGTCAGCGGACACCAAGACTCGTGCTAAGCCGCCGCTCAGCCGAGCCTCACTGTTCAGCCCGGGAATGGCAGAGAAGAAAGCGGAGAAGCGCAGGGTCACTCAGGCTCCCGCTGGCAAGCCAGCGATGAAGGACAGCGCCCCCTTCAGGCCGACTGTCCTCTCAGCCAACAAAATCAACGTCAGgtTTTCCAAAACGACGCAGGACAACGAGCACAAGCGCTCTCTGGTGAAGACTCCGGCCCGCATGTCTCCCATGCTTCCTCTCACTCCCACTCCGGCCAGGAAGTCTGAAGTGCACGCTAACAGGAACGCCGCTCCTGTCAACAAAACTCCAGgaTTGACTCCATTCGTCTTCAGCGGCGCCTCGGGCACTCCTGGGACCAACAAGAAAAACACCTTCGATCTGAAAGCGAGCCTCTCTCGCCCGCTCACGTACAAACCCCATAAGGGAAAGCTGAAGCCTTTTGGAGCGACGCAGGAAAACGCAGAGCTGAACAAGGCTCAAACGCTTCCTTCTCACCAGAAGAACTACAAACAGCACCAAGTGCAGACGCGAGACGAGCGGCGCGTTAAGCACAAGCAGGACAGGAGgcagaagaaggagaagatgcTCGATGCCAGACGTGGACTGGTTATGGCTTAGCGttcttgctttctttgtttttatagaAGATTTTCAAACTGTAGCTAcatgcaccttttttttttctttttttttttagcttgtgtgtctgtcttttgtAAGTGTTTgacgtgtgtgagtgtattgCCATCGCCTcgttttaagagaaaaaaaaacttcacaccCATCTATTTGTATATAGACCTGTCATGATGGAGGAATGCATTTTATTGTTGGGGAAAAACATTGTCGTCGAAGTTTaagcttttttaatttactattaAACAGaagttgtgtattttttttcaa

Function

symbol description
nusap1 Predicted to enable microtubule binding activity. Acts upstream of or within neural crest cell migration. Predicted to be located in spindle microtubule. Predicted to be active in mitotic spindle and nucleolus. Is expressed in blood island; brain; head; neural crest; and proliferative region. Orthologous to human NUSAP1 (nucleolar and spindle associated protein 1).

NR:

description
PREDICTED: nucleolar and spindle-associated protein 1 isoform X1

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005876 spindle microtubule cellular_component
GO:0005730 nucleolus cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302913.1 True 1681 mRNA 0.51 13 32375964 32381037

Neighbor

gene id symbol gene type direction distance location
LOC117596868 NA coding downstream 8174 32366310 ~ 32367790 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 30237 32339234 ~ 32345727 (-)
iqcc NA coding downstream 39487 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 44748 32315458 ~ 32331216 (-)
jag2a LOC108263062 coding downstream 144969 32191850 ~ 32230995 (-)
si:ch211-10a23.2 NA coding upstream 97264 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 128487 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 144367 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 288469 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 378634 32759671 ~ 32764344 (-)
G56670 NA non-coding downstream 66009 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 131674 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 167957 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 303466 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 442374 31859807 ~ 31933590 (-)
G56661 oip5 non-coding upstream 90 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 18878 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 33872 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 263655 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 282844 32663881 ~ 32664343 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 21464 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 86357 32239601 ~ 32289607 (-)
G56303 NA other downstream 537729 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 545032 31678383 ~ 31830932 (-)
slc66a3 pqlc3 other upstream 272799 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 334790 32715827 ~ 32728741 (-)
G57210 NA other upstream 638241 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 956366 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 1042627 33423664 ~ 33442815 (-)

Expression


Co-expression Network