LOC117596868


Basic Information

Item Value
gene id LOC117596868
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32366310 ~ 32367790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302917.1
tttgaattttttcaaCAATCGGGCACGTGGAAGAGAGTGGCGTGAACAGTTTTTCCTCCGTGAAGATGGATTTAGACTCCATGAAGTATGCAGACCTGCAGCAGCTCGCCAAGAGCGTTGGTTTAAAAGCTAACGTGAAGgcTGATAAGCTGCTGAAGGCGCTGAAGAGGTATTTTGAACAGAAAGAGAGCTCGGAGAATGATGATGCAAAGTCGCCTGGAGAGGAGGAGGACGGAGATAAAAGGAGCTCCAAGAGGAGGAAGGTGTCATCAGCTAAGGACACAGAAACTCCAGCTCCTGAGAAGAAACCCGAGTCTGCTGACGATGATGCTGTCGCTGAGGAGAGcgataaaggtgtgtgtgaagcaaGACAAGTATCAGTGTACATCACTGTGAAGGGttgattatatttaataaat

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005876 spindle microtubule cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302917.1 True 419 mRNA 0.47 4 32366310 32367790

Neighbor

gene id symbol gene type direction distance location
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 20583 32339234 ~ 32345727 (-)
iqcc NA coding downstream 29833 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 35094 32315458 ~ 32331216 (-)
jag2a LOC108263062 coding downstream 135315 32191850 ~ 32230995 (-)
esr2b esr2 coding downstream 177463 32131447 ~ 32188847 (-)
nusap1 nusap1 coding upstream 8174 32375964 ~ 32381037 (-)
si:ch211-10a23.2 NA coding upstream 110511 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 141734 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 157614 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 301716 32669506 ~ 32710211 (-)
G56670 NA non-coding downstream 56355 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 122020 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 158303 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 293812 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 432720 31859807 ~ 31933590 (-)
G56661 oip5 non-coding upstream 13337 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 32125 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 47119 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 276902 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 296091 32663881 ~ 32664343 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 11810 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 76703 32239601 ~ 32289607 (-)
G56303 NA other downstream 528075 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 535378 31678383 ~ 31830932 (-)
G56272 NA other downstream 536826 31827814 ~ 31829484 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 6546 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 286046 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 348037 32715827 ~ 32728741 (-)
G57210 NA other upstream 651488 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 969613 33337403 ~ 33344836 (-)

Expression


Co-expression Network