zgc:153169 (LOC108263419,LOC108426824,LOC107725444,LOC107666437)


Basic Information

Item Value
gene id zgc:153169
gene name LOC108263419,LOC108426824,LOC107725444,LOC107666437
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12769003 ~ 12774087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302928.1
CACATTTCCggtaaaatgtaaacaatcaaaAAGTTTTGCCTGTAGATAGCGAAGAGTGCACAACGTCGAAGGTGTTGAGCGGTCACTCAGACAACACTTAAAAGGGCAAGCTGTACCCGGGTACACATGCACAGAGACTACATAAGGCATACATCATGGCTGCTGTGGGCACTTGGTCCTTCTCCCTCCCTGCTGTAGAAAGAATGCGGTGCATGATTCTAGCTGGACAAAGTTCCACTGATGTTGTAGAGAGTGCAATTGCAGATGTTGAGAATGACGTGCAGACAGGCCGTTATATAGTTGGAAGAGGAGGCTTCCCCAATAACAAGGGAATAGTTGAATGTGATGCAGCAATAATGGAAGGTGTGCCTGGGAGATTTGGGGCAGTAGCTGCATTGCGCGGgGTAGGGCAGCCATGTCGAGTAGCACGCCAAGTAATGGAGAGAAGTCCTCACAGCTTTTTAGTTGGTGAAGGAGCTGAAGCTTTTGCACGGGAGCAGGGTTTTACCATTGAgcccaataacagcatgctctcAGACCATGCAGCCACTGCGTATCAGGAATTTCTTGAAAATGGGAAACAAGTCAGAGGCCATGATACTATCAGTCTTATTGCTTTGGATCTTGCAGGAAACATAACTGTAGGTGTTTCTACATCAGGAAAACCCTTCAAGGCTCCAGGGAGAGTGGGGGACTCTCCACTCCCTGGTTGCGGCCTATATGCTGACCACAGAGTGGGTGCTGCAGCAGCATCAGGAGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCAGATTGTACAGTTGATGAGACAGGGTTTGTCTCCTAAAGAAGCCTGTTGTTCTGTCCTTGCTGATATAAGGAAAAGAACTGGAGAAGACAAATGCTTTGAGATTGGGCTTATTGCCTTAAACATGAAgGGAGAGGTTGGTGCAGCTTCCTCAGTGGAATTCCCATATACTTTCTGGAAGCAGGGAATGGATTCAGTGGAACAACATGTCCTTTCTTATTAAATTTCCTCTTCCTTCTCAACAGTATAAACTTTCAAATATGCAATTTCAAGAGATAaaaatcttgtaaaaaaaaaaaaaaatcttatgtaCAGCAGTATGAATTATATAATAGTAATCTGTGTACATAATTGCTACTGTACTGAAGTATTTCATTgtgtaatttataatttattagtataatttggaattttattatatgccattttattttgttttttacataaTGGTTGTGGGTTATAATTACAGGCAGTTACTCATCAGAAAGAATTATAATATTATGTGATTCCTATTgtaatattaaaggaataatctATCTGA
>XM_034302929.1
CCACCTTGGTTGTGGTGGATATTTAcggacaacaacaacaacaacaaattcaCACCCGCAGGCTGTTTTCAATCTTTTTGCTCAGGTGTTGAGCGGTCACTCAGACAACACTTAAAAGGGCAAGCTGTACCCGGGTACACATGCACAGAGACTACATAAGGCATACATCATGGCTGCTGTGGGCACTTGGTCCTTCTCCCTCCCTGCTGTAGAAAGAATGCGGTGCATGATTCTAGCTGGACAAAGTTCCACTGATGTTGTAGAGAGTGCAATTGCAGATGTTGAGAATGACGTGCAGACAGGCCGTTATATAGTTGGAAGAGGAGGCTTCCCCAATAACAAGGGAATAGTTGAATGTGATGCAGCAATAATGGAAGGTGTGCCTGGGAGATTTGGGGCAGTAGCTGCATTGCGCGGgGTAGGGCAGCCATGTCGAGTAGCACGCCAAGTAATGGAGAGAAGTCCTCACAGCTTTTTAGTTGGTGAAGGAGCTGAAGCTTTTGCACGGGAGCAGGGTTTTACCATTGAgcccaataacagcatgctctcAGACCATGCAGCCACTGCGTATCAGGAATTTCTTGAAAATGGGAAACAAGTCAGAGGCCATGATACTATCAGTCTTATTGCTTTGGATCTTGCAGGAAACATAACTGTAGGTGTTTCTACATCAGGAAAACCCTTCAAGGCTCCAGGGAGAGTGGGGGACTCTCCACTCCCTGGTTGCGGCCTATATGCTGACCACAGAGTGGGTGCTGCAGCAGCATCAGGAGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCAGATTGTACAGTTGATGAGACAGAACAGCTGTTCTGTCCTTGCTGATATAAGGAAAAGAACTGGAGAAGACAAATGCTTTGAGATTGGGCTTATTGCCTTAAACATGAAgGGAGAGGTTGGTGCAGCTTCCTCAGTGGAATTCCCATATACTTTCTGGAAGCAGGGAATGGATTCAGTGGAACAACATGTCCTTTCTTATTAAATTTCCTCTTCCTTCTCAACAGTATAAACTTTCAAATATGCAATTTCAAGAGATAaaaatcttgtaaaaaaaaaaaaaaatcttatgtaCAGCAGTATGAATTATATAATAGTAATCTGTGTACATAATTGCTACTGTACTGAAGTATTTCATTgtgtaatttataatttattagtataatttggaattttattatatgccattttattttgttttttacataaTGGTTGTGGGTTATAATTACAGGCAGTTACTCATCAGAAAGAATTATAATATTATGTGATTCCTATTgtaatattaaaggaataatctATCTGA
>XM_034302930.1
CCACCTTGGTTGTGGTGGATATTTAcggacaacaacaacaacaacaaattcaCACCCGCAGGCTGTTTTCAATCTTTTTGCTCAGGTGTTGAGCGGTCACTCAGACAACACTTAAAAGGGCAAGCTGTACCCGGGTACACATGCACAGAGACTACATAAGGCATACATCATGGCTGCTGTGGGCACTTGGTCCTTCTCCCTCCCTGCTGTAGAAAGAATGCGGTGCATGATTCTAGCTGGACAAAGTTCCACTGATGTTGTAGAGAGTGCAATTGCAGATGTTGAGAATGACGTGCAGACAGGCCGTTATATAGTTGGAAGAGGAGGCTTCCCCAATAACAAGGGAATAGTTGAATGTGATGCAGCAATAATGGAAGGTGTGCCTGGGAGATTTGGGGCAGTAGCTGCATTGCGCGGgGTAGGGCAGCCATGTCGAGTAGCACGCCAAGTAATGGAGAGAAGTCCTCACAGCTTTTTAGTTGGTGAAGGAGCTGAAGCTTTTGCACGGGAGCAGGGTTTTACCATTGAgcccaataacagcatgctctcAGACCATGCAGCCACTGCGTATCAGGAATTTCTTGAAAATGGGAAACAAGTCAGAGGCCATGATACTATCAGTGTTTCTACATCAGGAAAACCCTTCAAGGCTCCAGGGAGAGTGGGGGACTCTCCACTCCCTGGTTGCGGCCTATATGCTGACCACAGAGTGGGTGCTGCAGCAGCATCAGGAGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCAGATTGTACAGTTGATGAGACAGGGTTTGTCTCCTAAAGAAGCCTGTTGTTCTGTCCTTGCTGATATAAGGAAAAGAACTGGAGAAGACAAATGCTTTGAGATTGGGCTTATTGCCTTAAACATGAAgGGAGAGGTTGGTGCAGCTTCCTCAGTGGAATTCCCATATACTTTCTGGAAGCAGGGAATGGATTCAGTGGAACAACATGTCCTTTCTTATTAAATTTCCTCTTCCTTCTCAACAGTATAAACTTTCAAATATGCAATTTCAAGAGATAaaaatcttgtaaaaaaaaaaaaaaatcttatgtaCAGCAGTATGAATTATATAATAGTAATCTGTGTACATAATTGCTACTGTACTGAAGTATTTCATTgtgtaatttataatttattagtataatttggaattttattatatgccattttattttgttttttacataaTGGTTGTGGGTTATAATTACAGGCAGTTACTCATCAGAAAGAATTATAATATTATGTGATTCCTATTgtaatattaaaggaataatctATCTGA
>XM_034302931.1
CCACCTTGGTTGTGGTGGATATTTAcggacaacaacaacaacaacaaattcaCACCCGCAGGCTGTTTTCAATCTTTTTGCTCAGGTGTTGAGCGGTCACTCAGACAACACTTAAAAGGGCAAGCTGTACCCGGGTACACATGCACAGAGACTACATAAGGCATACATCATGGCTGCTGTGGGCACTTGGTCCTTCTCCCTCCCTGCTGTAGAAAGAATGCGGTGCATGATTCTAGCTGGACAAAGTTCCACTGATGTTGTAGAGAGTGCAATTGCAGATGTTGAGAATGACGTGCAGACAGGCCGTTATATAGTTGGAAGAGGAGGCTTCCCCAATAACAAGGGAATAGTTGAATGTGATGCAGCAATAATGGAAGGTGTGCCTGGGAGATTTGGGGCAGTAGCTGCATTGCGCGGgGTAGGGCAGCCATGTCGAGTAGCACGCCAAGTAATGGAGAGAAGTCCTCACAGCTTTTTAGTTGGTGAAGGAGCTGAAGCTTTTGCACGGGAGCAGGGTTTTACCATTGAgcccaataacagcatgctctcAGACCATGCAGCCACTGCGTATCAGGAATTTCTTGAAAATGGGAAACAAGTCAGAGGCCATGATACTATCAGTCTTATTGCTTTGGATCTTGCAGGAAACATAACTGTAGGTGTTTCTACATCAGGAAAACCCTTCAAGGCTCCAGGGAGAGTGGGGGACTCTCCACTCCCTGGTTGCGGCCTATATGCTGACCACAGAGTGGGTGCTGCAGCAGCATCAGGAGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCAGATTGTACAGTTGATGAGACAGAGACAGAACTGTAGCAAGTTCTCCAAAAAGCATGGAACAACATACCAGCTAATTCTTTGAATACTGCACCCCAGTGTACCAATGAGAATTTATGCAGTTTTAAATGCAACCAATATTTTTCATGCATTATGTTAACATTTGCTGCTTAGCATGGTGATTATCTTGATACTTATAAACTTTGCATTTCGTTATTTTGGCCATTTTCATTTTGCACTATTTCTTTAGGTATGACTAAGagttttgcacagtaatgtatATAGTGTCTGAAATGTAGAACA

Function

NR:

description
uncharacterized protein LOC110502391 isoform X2

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302928.1 True 1334 mRNA 0.41 11 12769003 12774087
XM_034302929.1 False 1330 mRNA 0.42 11 12769617 12774087
XM_034302930.1 False 1309 mRNA 0.42 9 12769617 12774087
XM_034302931.1 False 1110 mRNA 0.45 9 12769617 12773210

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding upstream 6362 12759697 ~ 12762641 (+)
ccsapb LOC108263641 coding upstream 45762 12718905 ~ 12723241 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding upstream 51681 12714631 ~ 12717322 (+)
abcb10 abcb10 coding upstream 56214 12702450 ~ 12712789 (+)
trnat-ugu NA coding upstream 101117 12667814 ~ 12667886 (+)
rab1ab rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC108263420,LOC107725478 coding downstream 335 12774422 ~ 12782694 (+)
sertad2b sertad2 coding downstream 34996 12809083 ~ 12844674 (+)
lgalslb lgalsl,LOC107601863,LOC107666541,LOC107676594,LOC107552938 coding downstream 80914 12855001 ~ 12861968 (+)
echs1 echs1,LOC107601864,LOC107743519,LOC107676592,LOC107666378 coding downstream 89823 12863910 ~ 12868452 (+)
fuom fuom,LOC107676595 coding downstream 96985 12871072 ~ 12874985 (+)
LOC117596851 NA non-coding upstream 29777 12733432 ~ 12739226 (+)
G45170 NA non-coding upstream 94380 12674408 ~ 12674623 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding upstream 120597 12647895 ~ 12648406 (+)
LOC113542444 NA non-coding upstream 269984 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 453133 12315533 ~ 12315870 (+)
G45351 NA non-coding downstream 36832 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 46769 12820856 ~ 12821389 (+)
G45376 NA non-coding downstream 95916 12870003 ~ 12870223 (+)
G45453 NA non-coding downstream 186003 12960090 ~ 13031136 (+)
G45459 NA non-coding downstream 237859 13011946 ~ 13017600 (+)
LOC117596823 NA other upstream 125699 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 132597 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 1002589 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 1023779 11682864 ~ 11745224 (+)
spef1 spef1 other downstream 155472 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 208319 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 257963 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 723961 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1439282 14213369 ~ 14286542 (+)

Expression


Co-expression Network