si:zfos-1056e6.1 (LOC108263310)


Basic Information

Item Value
gene id si:zfos-1056e6.1
gene name LOC108263310
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22924521 ~ 22927550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302932.1
TGAAGTGGCTGAAATCACGCGCTGCTGCAGTCAGTGAGCTCAGGCTGCAGCAGAGATGAGTGGTCCAGTGGCTCATGCGGAAAATGCTCATGTGGCTGTATGGATTGCGTTGAAGAGGCTTGACCTTAATGATGACAGAGTGATAGCTCTGAGAGAAGTTCACATTCCCAGAGGGACAAAAATGACCACAGTGAGACAGATTGTAGCTCATTCTTTCAGACTGGACGTTGCTAAAGTCACCTTCAagTTACGAAACAGTCAAGGCTTTTTAATCCCTTTGAATGGCTGTATACCAGTGAACACCAAACAAATGCCTTATGTCTTGGAGGTGGCCAGATATTTTCAGCATGTTAATGCAAAACCCAGAAACATTGCCCTGACGGTCATAAACAGAAGCTTGAAGTCAAGACTACAGAGTATTGTGAGAAGGATTGAAAGACTAGAAGAGCTCCTGCCTCAAGTCAAGCAAAAGCAGAATGAGAAAATGGTCAAGGACATTGAACTGTTAAACCAGAAGCTGATATTCCTACACAAAAGAATGCAGATGGCAGAGTCATACTGCTGGGAGGGAATGTTTAAACGAGCACCACTCTGgtgatctttttttctgtactcCACTCCAACCTCCTGTGTAAAAGGAGGAAATTTGGGTGTTTTTAAAACAGCTAAACTATGTGCTCAACTAGTTTACCTAGTGAAATAGTAATGCCTAATAACACTTACCAAAGCATTGTACCACTGGCCATTCATCCGAttcataaatttattcattgtgTTACTGCATAATGAACAACCTCTCTATACTTTCAGAAATAAGCAAGTTCAATTCAAGTTGACAAGTGTTAATGATGACATTGACAAAATGACGTAATAAGGACTTTCTTTCACCTGTACTGAAAATGGGTTCACTGTGTAAGGTCTTTCAATACTTGGCACTTTCGTGGCACATAAGTGCATTACGATTTCTTAAAACAGATTCTAgtattaaagtttaaaaaaaaaaacaaaaaactgcatCATAGTAAGGCGTTGGGCCACCAGACCACCTTGGCTTTACACCATTTCATACTcgtcaaaccattcagtgagtcctTGTGCCCTTGGCAGAGACCGTTCCCATCAGGATTGAAATGTTCAGCATAGGCCCGATCACtttgtactgatttgcagtgtCCCTTCCACCCAAGGGGAAAAGTGGACCATGTCAGCCAAATGACATTCACAACATAACCGCCACAatcttttcctttaatttgtttcCCGTTTATATACTGTGATAGTGGAGACTGAAGCAGGCTTTCTAGAGTAGCTTTTTCGGATTATAAAGTGTAactgctgagacacacacacacacacacacacacacacacaccttcttttTCACCTGTTATATCATAAGGAAGAATTTTGTAGGTTCCATTATTTCCACTAGGAGGTTTGACCGTGTTTAAAACAAGAAACAGATCAGTAGAATACTATCTAGGTCT

Function

NR:

description
PREDICTED: solute carrier family 2, facilitated glucose transporter member 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302932.1 True 1487 mRNA 0.41 9 22924521 22927550

Neighbor

gene id symbol gene type direction distance location
LOC113540824 syndig1,LOC107717853 coding upstream 33652 22870890 ~ 22890869 (+)
mea1 mea1 coding upstream 178717 22742727 ~ 22745804 (+)
dlk2 dlk2 coding upstream 203633 22696395 ~ 22720888 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding upstream 302828 22608479 ~ 22621693 (+)
yipf3 yipf3,LOC107696384 coding upstream 316491 22601556 ~ 22608030 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding downstream 54052 22981602 ~ 22986797 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding downstream 124678 23052228 ~ 23069644 (+)
spred2b spred2,LOC108263653 coding downstream 143758 23071308 ~ 23101134 (+)
LOC113545030 NA coding downstream 186635 23114185 ~ 23115039 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding downstream 292571 23220121 ~ 23276316 (+)
LOC117596907 NA non-coding upstream 187854 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 388084 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 475012 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 587477 22266697 ~ 22337044 (+)
G51358 NA non-coding downstream 30850 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 142771 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 145406 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 147180 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 279565 23207115 ~ 23275341 (+)
LOC113540861 LOC108263311 other upstream 10969 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 138016 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 371769 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 900710 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1805557 21025733 ~ 21118964 (+)
G51562 NA other downstream 526878 23454428 ~ 23455549 (+)
G51749 NA other downstream 769482 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 866130 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 1127604 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1422634 24350184 ~ 24402454 (+)

Expression


Co-expression Network