LOC117596872


Basic Information

Item Value
gene id LOC117596872
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33764823 ~ 33769298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302939.1
TGACGTGGTAGCAGCGTGTGTAACTCTGTATGAACTCGGTGGGATGAAGCATGCTGTCTCCTGCCTCAGTCTGTTAAACTTCTAACCTGTCTACTTCTATTtaaccatcttcatcatcatcatcatcatcatcttcatcatcatcatcatcatcttcatcatcatcttcatcctctcTGCAGCGTCCTTTACAAAGGAAGGAACAGACTGACTGTTAAACGGTCTCTTTGTGGTGATGAACAGAAACGTGTTGCagtcactctcacactctcacactcctgAATCTGTCTCTGCAGTGTCCTTCACAATGGATCatcacagcccagacatgtccAACATCAGTCAAGGTGAAGATCCAGAAGATCCTCAAGATCTAAAAGATCCTGAAGATTCAGAAGATCCTGAAGATTCGGAAGATCCTGAAGATCTAGAAGATCCTCAATCTTCAGAAGATCCTGAAGATCAAGAAGAGAAACCTCGAAAGCCCATAAGACGAAGAGGATCTCTGATTATTCCTCCTCATTTCTCCTCACAAGATGCAGAGACAGAAAGTCAACATTCTACCTGTGTAGAAGAGAATCAGGACAAGACAccaacatcacacaccatcacacaccactaaacaccatcacacaccactaaacaccattaaatgtgtgtttattacgTCCTTCACCGCTGCTGCagtttaataacaataatcctggatttatttattaatccagACATTTTGGAGAaagtttgtaaaatgttttttactcAAATTCACTAAAGTGGAAAGTTTCTGAGGGTCTGAACAACACTGTGAACTGAAGCTACACAATGGCAGCTGTAATGATCACTTcacatgtgtgttattttactgTGTGTTAGAGTTGTGTATTAG

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302939.1 True 886 mRNA 0.41 3 33764823 33769298

Neighbor

gene id symbol gene type direction distance location
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding downstream 66531 33694201 ~ 33698292 (-)
pcnx1 pcnx1,LOC108262680 coding downstream 71896 33663814 ~ 33692927 (-)
lgmn lgmn,LOC100304954 coding downstream 107953 33645758 ~ 33656870 (-)
si:dkey-157l19.2 LOC108262993 coding downstream 120605 33610457 ~ 33644218 (-)
LOC113541868 NA coding downstream 172016 33587893 ~ 33592807 (-)
LOC113541951 NA coding upstream 5258 33774556 ~ 33776425 (-)
LOC113541873 NA non-coding downstream 536 33761518 ~ 33764287 (-)
G57379 NA non-coding downstream 2295 33701220 ~ 33762528 (-)
G57390 NA non-coding downstream 27338 33728256 ~ 33737485 (-)
G57378 l2hgdh non-coding downstream 60497 33702505 ~ 33704326 (-)
G57368 NA non-coding downstream 104802 33656994 ~ 33660021 (-)
LOC113542143 LOC108263078 other downstream 194587 33562778 ~ 33570236 (-)
trnag-gcc_5 NA other downstream 234826 33529927 ~ 33529997 (-)
mycla LOC108263077 other downstream 240004 33480348 ~ 33524819 (-)
G57322 NA other downstream 302481 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 322008 33423664 ~ 33442815 (-)

Expression


Co-expression Network