LOC113543264


Basic Information

Item Value
gene id LOC113543264
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7704449 ~ 7712546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302950.1
GGCGGGACTCTTTAGAGCCTTAAATAGTCTCAGATTGTCTAGTGCTACTTCTTTGTCTACTTCTGTCTCGACTTCACAAAGGGACATTTCTTCAAATCATTGTGATTTTGTATCACTGTGGTGCAATGTCTGCAAAGGCACAGGAAACATTTATTGATACAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGCTCTTCTGgaaacacaatattaggcaaaaGACTGTTCAAATCAGAGGCATCTGCAAAGTCTGTGACACAGGAATGTTTAACTGCTACAGAGATAATCAATGGCTATCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACTGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTGTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGAACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCAGTGATGACCTGGAGGGGAAAGCTTTTAAGGACTATATTAAGGAAGGAGGTAAAGAGTTCCATGATCTGTTAAAGCAGTGTGGTGACAGACACCACTGCTGGAACAATAGACAAAACACATCTGATGAGACTGTGAAAGAACTGCTAAAGGATttgaaaaagacagagacaatAAATCTAAATTCAGTGAAGACTTCCCAAGGCAACATGAACAACAACGAAGAAAACCCTTCTGCTTGTTCCTCTTATGGTGAGCAGAGAAATTGGTCAAGAGATTTAGAAACACACATGTCTAAAAATCAAatcagagttttattccttGGAATGAACAGGGTTGGAAAAACCTCAAGCATGAATATCCTTCTTGAAAAATGTGTACAAAGTGGAATCGGAGGAGATGCAGTTTATACACACCTTAGCTCTGGACTGAGTCTGAAGCTGATAGAATCTCCTGGCTTTGATGATAATCCGGAACGAATCCAGAAGGCCATCTCCAAATCTGTGTCCAACTGCCATCCAGGACCTCATGTCATTATTATAGTGCTGAGAGTGGAGCGCTTCACTCCAGCAAGAAAGACAGCCATGAAACGGGTACAAGGTTGTCTTGGAGAAAATGccagaaaacacacaatgaTTCTGTTCACTGGAGAGGATAATTTGGAGGGCAAACCCATTGACCTCTTCATTCAAGAGAATCAGCATCTCAAAGAATTAGTGAAAATACACAAGAACAGATATCATGTGCTAAATAACAGAGACACCAGCAATGAGACTCAAGTAGATGAACTGCTGAAGAAGATTAATGACctgtacaaacaaaataataaagaattttaCACAAAAGAGCAAGAATCTCCAGATCCTGATCACCAGACAGtaaTGCAGTCTGTAAAGGGAAGGTGGGAAACAGATGTAAAATGTCACACTTCCAAGAGCACTGGTGTGAATTGCCCTATAAATTGACAGAAATGATCATACATTCCTTTTAGCAAGAACAATCAGGATTCATCCAGGGATGTCTGATTACTCCAAAGATGCAAGTAGCTTGGCTCCATCATGTACATAATACGTAGAAGAGCATTTACACCATAATATATATTGCAATGAGTCCCTCCAAACCTTACTAAAAATGCTtgaagacacattttttttctgaacatcaGCTcactgatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagtgggtgtgtactatactatatattgCTATTCATACCTGTTCTTTGTTGCTGTATGATTACCTTTTTACTGTAAACCTATGTACATTGCAGCTTCTTGTATTACTATAGGGTGTGATAGCATAACTATGTAAACTGGAGTTTAACTGCTTGTTTTATAATTAAAGTTTGTAGCTTTCATTCAACCTTATTTTAGATGTTATGGTTAGTTGTGGCTTGCAGTGTTCACCCAATggctatttttacattttaaaataggGCTGGGATATATGATCCAATAAATCCCTTTCTAGATTTAGTGATGTCCTTGATTTATGATGCTtgggtttttattattaatcatcaaaattataattttttttttaaagattaagctattcatttttttgtactgTGTCTCGTGGCAATACATGCACACTCGAATTTGTCAGATTTGCTCAGAGAAGATGGAGAAGAAAACCATGgagatatgtttttaaatctttgctTCTGGAGTTCAACACTAGATGGAGTCCTCGAATTATGCTCCTGATGTTGCTCCTCCTCTCAGAGACTCAATGACACTGATTGTTTAGTCTGTCCTCAATATGTCTCACTTTAAAGTTATGTTTTTCCCTTAAACTGCTGACATTTGAAAATGCACTGCTATGATGGTAGCTCAgtaagtatacagtatacagaagAATGTAACTCAAAGagaaaaagtaaattaaacgTGTACAGCATGTCAACTA
>XM_034302951.1
GGCGGGACTCTTTAGAGCCTTAAATAGTCTCAGATTGTCTAGTGCTACTTCTTTGTCTACTTCTGTCTCGACTTCACAAAGGGACATTTCTTCAAATCATTGTGATTTTGTATCACTGTGGTGCAATGTCTGCAAAGGCACAGGAAACATTTATTGATACAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGCTCTTCTGgaaacacaatattaggcaaaaGACTGTTCAAATCAGAGGCATCTGCAAAGTCTGTGACACAGGAATGTTTAACTGCTACAGAGATAATCAATGGCTATCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACTGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTGTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGAACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCAGTGATGACCTGGAGGGGAAAGCTTTTAAGGACTATATTAAGGAAGGAGGTAAAGAGTTCCATGATCTGTTAAAGCAGTGTGGTGACAGACACCACTGCTGGAACAATAGACAAAACACATCTGATGAGACTGTGAAAGAACTGCTAAAGGATttgaaaaagacagagacaatAAATCTAAATTCAGTGAAGACTTCCCAAGGCAACATGAACAACAACGAAGAAAACCCTTCTGCTTGTTCCTCTTATGGTGAGCAGAGAAATTGGTCAAGAGATTTAGAAACACACATGTCTAAAAATCAAatcagagttttattccttGGAATGAACAGGGTTGGAAAAACCTCAAGCATGAATATCCTTCTTGAAAAATGTGTACAAAGTGGAATCGGAGGAGATGCAGTTTATACACACCTTAGCTCTGGACTGAGTCTGAAGCTGATAGAATCTCCTGGCTTTGATGATAATCCGGAACGAATCCAGAAGGCCATCTCCAAATCTGTGTCCAACTGCCATCCAGGACCTCATGTCATTATTATAGTGCTGAGAGTGGAGCGCTTCACTCCAGCAAGAAAGACAGCCATGAAACGGGTACAAGGTTGTCTTGGAGAAAATGccagaaaacacacaatgaTTCTGTTCACTGGAGAGGATAATTTGGAGGGCAAACCCATTGACCTCTTCATTCAAGAGAATCAGCATCTCAAAGAATTAGTGAAAATACACAAGAACAGATATCATGTGCTAAATAACAGAGACACCAGCAATGAGACTCAAGTAGATGAACTGCTGAAGAAGATTAATGACctgtacaaacaaaataataaagaattttaCACAAAAGAGCAAGAATCTCCAGATCCTGATCACCAGACAGtaaTGCAGTCTGTAAAGGGAAGGTGGGAAACAGATGTAAAATGTCACACTTCCAAGAGCACTGGTGTGAATTGCCCTATAAATTGACAGAAATGATCATACATTCCTTTTAGCAAGAACAATCAGGATTCATCCAGGGATGTCTGATTACTCCAAATTTGCTCAGAGAAGATGGAGAAGAAAACCATGgagatatgtttttaaatctttgctTCTGGAGTTCAACACTAGATGGAGTCCTCGAATTATGCTCCTGATGTTGCTCCTCCTCTCAGAGACTCAATGACACTGATTGTTTAGTCTGTCCTCAATATGTCTCACTTTAAAGTTATGTTTTTCCCTTAAACTGCTGACATTTGAAAATGCACTGCTATGATGGTAGCTCAgtaagtatacagtatacagaagAATGTAACTCAAAGagaaaaagtaaattaaacgTGTACAGCATGTCAACTA
>XM_034302952.1
GGCGGGACTCTTTAGAGCCTTAAATAGTCTCAGATTGTCTAGTGCTACTTCTTTGTCTACTTCTGTCTCGACTTCACAAAGGGACATTTCTTCAAATCATTGTGATTTTGTATCACTGTGGTGCAATGTCTGCAAAGGCACAGGAAACATTTATTGATACAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGCTCTTCTGgaaacacaatattaggcaaaaGACTGTTCAAATCAGAGGCATCTGCAAAGTCTGTGACACAGGAATGTTTAACTGCTACAGAGATAATCAATGGCTATCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACTGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTGTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGAACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCAGTGATGACCTGGAGGGGAAAGCTTTTAAGGACTATATTAAGGAAGGAGGTAAAGAGTTCCATGATCTGTTAAAGCAGTGTGGTGACAGACACCACTGCTGGAACAATAGACAAAACACATCTGATGAGACTGTGAAAGAACTGCTAAAGGATttgaaaaagacagagacaatAAATCTAAATTCAGTGAAGACTTCCCAAGGCAACATGAACAACAACGAAGAAAACCCTTCTGCTTGTTCCTCTTATGGTGAGCAGAGAAATTGGTCAAGAGATTTAGAAACACACATGTCTAAAAATCAAatcagagttttattccttGGAATGAACAGGGTTGGAAAAACCTCAAGCATGAATATCCTTCTTGAAAAATGTGTACAAAGTGGAATCGGAGGAGATGCAGTTTATACACACCTTAGCTCTGGACTGAGTCTGAAGCTGATAGAATCTCCTGGCTTTGATGATAATCCGGAACGAATCCAGAAGGCCATCTCCAAATCTGTGTCCAACTGCCATCCAGGACCTCATGTCATTATTATAGTGCTGAGAGTGGAGCGCTTCACTCCAGCAAGAAAGACAGCCATGAAACGGGTACAAGGTTGTCTTGGAGAAAATGccagaaaacacacaatgaTTCTGTTCACTGGAGAGGATAATTTGGAGGGCAAACCCATTGACCTCTTCATTCAAGAGAATCAGCATCTCAAAGAATTAGTGAAAATACACAAGAACAGATATCATGTGCTAAATAACAGAGACACCAGCAATGAGACTCAAGTAGATGAACTGCTGAAGAAGATTAATGACctgtacaaacaaaataataaagaattttaCACAAAAGAGCAAGAATCTCCAGATCCTGATCACCAGACAGtaaTGCAGTCTGTAAAGGGAAGGTGGGAAACAGATGTAAAATGTCACACTTCCAAGAGCACTGGTGTGAATTGCCCTATAAATTGACAGAAATGATCATACATTCCTTTTAGCAAGAACAATCAGGATTCATCCAGGGATGTCTGATTACTCCAAtgtgattgctgtgttctcacctgctcAAATGAAGAACACCAAGGGGACACCAGGTTTCACTGAATGCTGATTATATGAAAGAGATGAACAAAATCTAAT

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302950.1 True 2492 mRNA 0.38 4 7704449 7707685
XM_034302951.1 False 1871 mRNA 0.40 4 7704449 7707685
XM_034302952.1 False 1667 mRNA 0.40 4 7704449 7712546

Neighbor

gene id symbol gene type direction distance location
htra3a LOC108263851 coding upstream 9922 7680769 ~ 7694527 (+)
LOC113543305 LOC108262750 coding upstream 26590 7675236 ~ 7677859 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 283520 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 296333 7396425 ~ 7408116 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding upstream 311202 7384072 ~ 7393247 (+)
LOC117596357 NA coding downstream 3494 7716040 ~ 7735909 (+)
gpr78a NA coding downstream 37090 7749636 ~ 7755159 (+)
cpz LOC108263841,LOC108434808 coding downstream 45064 7757610 ~ 7771338 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding downstream 357275 8069821 ~ 8080290 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding downstream 729239 8441785 ~ 8445916 (+)
G42295 NA non-coding upstream 59527 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 229409 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 282153 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 310665 7348159 ~ 7393784 (+)
G42304 NA non-coding downstream 9103 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 20896 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 154129 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 196878 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 462939 8175485 ~ 8176073 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 33039 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 74309 7620545 ~ 7630140 (+)
G42075 NA other upstream 483426 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1475764 5895431 ~ 6228685 (+)
G41047 NA other upstream 2362699 5318534 ~ 5341750 (+)
G42685 NA other downstream 753201 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 757078 8469624 ~ 8469881 (+)
sprn sprn other downstream 2839713 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2882028 10594574 ~ 10608704 (+)
dntt dntt other downstream 3387047 11099593 ~ 11207862 (+)

Expression


Co-expression Network