LOC117596878 (LOC108263069)


Basic Information

Item Value
gene id LOC117596878
gene name LOC108263069
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6643933 ~ 6659991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302954.1
GCATTAGAGTGAAAGAGAGCAGACTGGTGATGAGAGAGAGCTTCATTCACACAGCAGCGTCTCTGCAGCATCATCATGTTGTTCTGCTGGGGAGCTTCATCCCGAGGACAGCTCGCTTTTCCCGGCACTGGAGGGAAAGACATCGCCACACCGACTTCAGTAAACTTTAATGAACAACTCGTTCAGATATCTTGTGGAGAGCAGCACACTTTATTCCTGACAGGAAGCGGTCAGGTGCTGTCCTGTGGCCGAAACTCTAAAGGACAGCTGGGACGATCCAAGAGCAGAGACACCAAACTgccagTGAAGATTGAAGGATTGGGAGCTGTAGCTGCAATAGCATGTGGACAGGACCACAGTTTGGCTCTGTGTGATTCAGGTCAAGTGTTTTCCTGGGGAGCGGGTGGAGAAGGTCAGCTGGGCCACAGCAGCCCGGTGGCAAAATGTCCCAAACCAGTGCCAGTTCAGATAAAATTACCCTTCCAGATCCCAGTAGTGCAGGTGGCTTGTGGAGATTTCCATTCTTTGGCCCTAACCAAGGGAGGTGAAGTCTTTTCATGGGGTCAGAATAAATATGGGCAGCTGGGACTGGGGAAATCAGTGGACCTGCAGCCTGAACCTGCTCTGGTCCGATTTCTTGTCGGAGTTCCAGTCATTCAGATCTCTGCTGGTGGAGCTCACACCCTGGCCCTGGCTCTCTCAGCTCAAGTGTTCTGCTGTGGAGCTAACAGTGTTGGACAGCTGGGCCTTAAAAGGACTGATGTAAAAGGCCGATTTGCAGTATGTGCAGTTCCAGCTTTGAGGAACTTGGGGGTTTCTTCCATCAGCTGTGGAGCAGCTCACACTGCTGTCCTTACTAAGGCTGGAGAGGTGTACACATTCGGAGAGGGAGCTGATGGTCAACTTGGGCACAACTCCACCAATAACGAGCTTCTACCCCGGAAAGTTGAAGGCATTGATGGACCTGCTAAACAAGTAACCTGTGGCAGCCACCACACTCTGGTTCTGATGCCGTCTGGTGTCCTCTTCACATTTGGCCGTGACGTCCACGTTCAGGCGAGTGGTGGCACTGAGAACAGCCTGCAGCCGGTAAGACTGGAAGGAGACTGGAGCAACTCAGGAGCAGGGatacacacagAAATGAAGATATCATCTGGCTGGAGTTCcaactttcttttctttccaccTTCCAAGaCCAATATTCTTGGAGAGCCAATTGGAAAACTTAAAAAGGCCCAAGTGCAGAGATGGGTTACAATGTTGGAGAGTGATAAAAGCATCAAAGAAATCAAAAGGGAGATTTCCTTGACTTTTGCTACAAGTTCAAATCTCGTCGCCTGCTTCATTAAGGACAGTAGAAATACTCCAGGTACTATTCAGGTTGATTTGAATGCTGCTAGCCAGACCTTTGACCAGCTCCTGAAGATTGCTTGGATCAAGAATTCAATAAACATCACACATGTTGTGCACATTGTTTTTTATGCTGCTCCGGTGATGAGGTGTCCTGAAATCTTCCTGCTTCTGCCCACATGCTCCATTCTTCACGAACAACACAATGTCATTGAACTGGTGCTGCCGTTAGCTGTAGCCATCACAAAACTCCATGAGACTGCCATGAAAAGCTTGAAGGAGTACTTGTCCTCCATGGATGCCAGCATTATGACCAAGCACATCTGTATGTGGAAACAAGCACTTGCCTTCCTCTTGAAGTCCAATGTGTGGTTAAACTATAACCCTGGTGTGAAAGCAGTGCTGGAAGTCCTCAAGTTACTTTACAGGGGAAACAAAAGAGCTGAAAGATCGAGGCAGGTTGCGCTCACTGAGTTCTACATAGAGGAGATAGGCACCTCGCCTCAGTTACTTCAACGGGACGTCACGCTGTGGAGGCAGATTAAATGGGGAGAAGTTCTGGAAGTGGAACATACACCTGCTATCTTCTGTCGTTACCCATTTCTTTTGGATCTGAAGAGCAAAATCATCATTTTAAACTATGTTGCATCCATAACACAGATGGTTCATCAGTTCATCCACGATGATGTGGCAGCTGGAGGGATGTTTCAGGAGGCATATAAATGGGAGGTCCCGACACCCATTCTCCAGCTGAAACTGAGACGCACTGCCTTGCTCGAGGACACATTCAGACAACTTGACAATGCCGACCATGACAACTTCAAAAAAACATTAGTGGTGCAGTTTGTAGAAGACTCCAAACTGACTGAAGTGAACAAAAGGGATTTCTTCCTCCATGCTTTTGATGAGCTTTTGGCTCCTGAATCAAGGATGTTCATGAGAAATGACAGCAAAACAATGATCTGGTTCCCTGCCAAGCCAGCACATGACTCAAAGCGGTACTTCCTGTTTGGGATCCTCTGCGGCCTGGCCCTCTACAATAACAACATAGTGCATATGCCCTTTCCTCTGGCCTTGTTTAAGAAACTGGTCAGTGTAAAGCCCACTCTGGAGGATATGAATGAGTTCAGGCCACAAGTTGGCAAGAGTTTGCAATACCTTTTACATGACTACAAAGATGACGATGCTGAGAACATGGACATCACTTTCCGTGTGCACTGGGATGGTGCAGATGTGGAGCTGGATTCTCACGAAAGAGAAAAACCTGTGACAAGTGCTAACAAGAAGGAGTTTGTGGCGGCATATGTGGATTACGCACTGAACAAGTCAGTGGAGCAGGTGTTTAATGAGTTTAAGAGGGGATTCTACAAAGTGTGTGATGAAGATGTGGTGAACTTCTTCCAGCCGGAGGAGCTCAGAGGAGTGATGGTGGGCACAGAGGAATACGACTGGGACACTTTCAGACAGaatacagtatatactgggCAGTACCACGTGAGACACCCCTCTATCATTGCTTTCTGGGAGGTATTTGAGGAGCTGACGGAGAAGCAAAAGAAAGCCTTTCTCTtgtttctgacAGGCTGTGATCGTGTACCCATCCTTGGGATGGACCAGGTTAGGATGACTGTGTTGGACCGTCCTAACTTCACCCAGGACCACCTCCCGGAGTCCCTCACCTGCCACTCTTATTTCATGCTCCCTCCATATGAGAACAAGCAGCGTCTGGAGGCAAAGCTTATTGAAGCAATAGACCACAACCAAGGCTTTTGGATAGAAAATCCAACAAGTGAATCTTTGAATTGATCTTTGAATATTAAGGTCATGCATTGTTCTAAATCTTATGTACCGCTATAacatatatatcattttttgcTTAACAGTCTGCTTGTTATATTAGATTGCTAATCAGACCTGATTTACTAAAATTTCAAATAACGAGCACTAGTTTTCTTGTTGCGGGTGAATTACAAAGAATATTTGCGTGAATTATGTCATTTACAAAGTAGGGTCAGGAAACACTATGTCAGTTAGGTTCTTGCATGTACCATTTGTTCTTATTAGCAGCAGTGAATACAAAACTGAAATTGGCCACACAGGCATAATTGCTTGTCCATTATGACACTGATTAAAGACAATGATACGCATCGAAAAAGCTACAGAATACAACAGAACATAAAAGTATGTTCTGTTCATGAGGTAAAATGTGAATGGAAATCTTTTCACAGGCTTTATTCAAATGTTGTAAGCATCAGAAAGGaagctttctgattatttttggaTTCTAAGGCATAATCTTGAAAAACCTAGTAATTATAAAAACCTAGTGAATAGTATAATTTAACATTCAAATGCCAGAACCAGGCTTCCACAGATATAATACTAATTTGTACATGCAGTCACTATTTCTGAAGTCTGGCTTTCAGGCTGCATTACAGTAAATCAAATTGTGGGTGCAAAACTAATCTCTTTATATTAATATCGCCATGTATTATCCAAGTTTAGGTAGAATTGCACAACATAGCAATTTCATTAATATACATATTACTTATTAACTCCTTTCACTCTGAACAAATACTAACTGATCAAATTCTGTGTAACCAAAGGTTTATTATATCTATACTAAGGTTTACTTCTTGCAACAGCTACTGCAgctgaataaaaaagtaaacacactGTGTCACTAA
>XM_034302955.1
GCATTAGAGTGAAAGAGAGCAGACTGGTGATGAGAGAGAGCTTCATTCACACAGCAGCGTCTCTGCAGCATCATCATGTTGTTCTGCTGGGGAGCTTCATCCCGAGGACAGCTCGCTTTTCCCGGCACTGGAGGGAAAGACATCGCCACACCGACTTCAGTAAACTTTAATGAACAACTCGTTCAGATATCTTGTGGAGAGCAGCACACTTTATTCCTGACAGGAAGCGGTCAGGTGCTGTCCTGTGGCCGAAACTCTAAAGGACAGCTGGGACGATCCAAGAGCAGAGACACCAAACTgccagTGAAGATTGAAGGATTGGGAGCTGTAGCTGCAATAGCATGTGGACAGGACCACAGTTTGGCTCTGTGTGATTCAGGTCAAGTGTTTTCCTGGGGAGCGGGTGGAGAAGGTCAGCTGGGCCACAGCAGCCCGGTGGCAAAATGTCCCAAACCAGTGCCAGTTCAGATAAAATTACCCTTCCAGATCCCAGTAGTGCAGGTGGCTTGTGGAGATTTCCATTCTTTGGCCCTAACCAAGGGAGGTGAAGTCTTTTCATGGGGTCAGAATAAATATGGGCAGCTGGGACTGGGGAAATCAGTGGACCTGCAGCCTGAACCTGCTCTGGTCCGATTTCTTGTCGGAGTTCCAGTCATTCAGATCTCTGCTGGTGGAGCTCACACCCTGGCCCTGGCTCTCTCAGCTCAAGTGTTCTGCTGTGGAGCTAACAGTGTTGGACAGCTGGGCCTTAAAAGGACTGATGTAAAAGGCCGATTTGCAGTATGTGCAGTTCCAGCTTTGAGGAACTTGGGGGTTTCTTCCATCAGCTGTGGAGCAGCTCACACTGCTGTCCTTACTAAGGCTGGAGAGGTGTACACATTCGGAGAGGGAGCTGATGGTCAACTTGGGCACAACTCCACCAATAACGAGCTTCTACCCCGGAAAGTTGAAGGCATTGATGGACCTGCTAAACAAGTAACCTGTGGCAGCCACCACACTCTGGTTCTGATGCCGTCTGGTGTCCTCTTCACATTTGGCCGTGACGTCCACGTTCAGGCGAGTGGTGGCACTGAGAACAGCCTGCAGCCGGTAAGACTGGAAGGAGACTGGAGCAACTCAGGAGCAGGGatacacacagAAATGAAGATATCATCTGGCTGGAGTTCcaactttcttttctttccaccTTCCAAGaCCAATATTCTTGGAGAGCCAATTGGAAAACTTAAAAAGGCCCAAGTGCAGAGATGGGTTACAATGTTGGAGAGTGATAAAAGCATCAAAGAAATCAAAAGGGAGATTTCCTTGACTTTTGCTACAAGTTCAAATCTCGTCGCCTGCTTCATTAAGGACAGAAATACTCCAGGTACTATTCAGGTTGATTTGAATGCTGCTAGCCAGACCTTTGACCAGCTCCTGAAGATTGCTTGGATCAAGAATTCAATAAACATCACACATGTTGTGCACATTGTTTTTTATGCTGCTCCGGTGATGAGGTGTCCTGAAATCTTCCTGCTTCTGCCCACATGCTCCATTCTTCACGAACAACACAATGTCATTGAACTGGTGCTGCCGTTAGCTGTAGCCATCACAAAACTCCATGAGACTGCCATGAAAAGCTTGAAGGAGTACTTGTCCTCCATGGATGCCAGCATTATGACCAAGCACATCTGTATGTGGAAACAAGCACTTGCCTTCCTCTTGAAGTCCAATGTGTGGTTAAACTATAACCCTGGTGTGAAAGCAGTGCTGGAAGTCCTCAAGTTACTTTACAGGGGAAACAAAAGAGCTGAAAGATCGAGGCAGGTTGCGCTCACTGAGTTCTACATAGAGGAGATAGGCACCTCGCCTCAGTTACTTCAACGGGACGTCACGCTGTGGAGGCAGATTAAATGGGGAGAAGTTCTGGAAGTGGAACATACACCTGCTATCTTCTGTCGTTACCCATTTCTTTTGGATCTGAAGAGCAAAATCATCATTTTAAACTATGTTGCATCCATAACACAGATGGTTCATCAGTTCATCCACGATGATGTGGCAGCTGGAGGGATGTTTCAGGAGGCATATAAATGGGAGGTCCCGACACCCATTCTCCAGCTGAAACTGAGACGCACTGCCTTGCTCGAGGACACATTCAGACAACTTGACAATGCCGACCATGACAACTTCAAAAAAACATTAGTGGTGCAGTTTGTAGAAGACTCCAAACTGACTGAAGTGAACAAAAGGGATTTCTTCCTCCATGCTTTTGATGAGCTTTTGGCTCCTGAATCAAGGATGTTCATGAGAAATGACAGCAAAACAATGATCTGGTTCCCTGCCAAGCCAGCACATGACTCAAAGCGGTACTTCCTGTTTGGGATCCTCTGCGGCCTGGCCCTCTACAATAACAACATAGTGCATATGCCCTTTCCTCTGGCCTTGTTTAAGAAACTGGTCAGTGTAAAGCCCACTCTGGAGGATATGAATGAGTTCAGGCCACAAGTTGGCAAGAGTTTGCAATACCTTTTACATGACTACAAAGATGACGATGCTGAGAACATGGACATCACTTTCCGTGTGCACTGGGATGGTGCAGATGTGGAGCTGGATTCTCACGAAAGAGAAAAACCTGTGACAAGTGCTAACAAGAAGGAGTTTGTGGCGGCATATGTGGATTACGCACTGAACAAGTCAGTGGAGCAGGTGTTTAATGAGTTTAAGAGGGGATTCTACAAAGTGTGTGATGAAGATGTGGTGAACTTCTTCCAGCCGGAGGAGCTCAGAGGAGTGATGGTGGGCACAGAGGAATACGACTGGGACACTTTCAGACAGaatacagtatatactgggCAGTACCACGTGAGACACCCCTCTATCATTGCTTTCTGGGAGGTATTTGAGGAGCTGACGGAGAAGCAAAAGAAAGCCTTTCTCTtgtttctgacAGGCTGTGATCGTGTACCCATCCTTGGGATGGACCAGGTTAGGATGACTGTGTTGGACCGTCCTAACTTCACCCAGGACCACCTCCCGGAGTCCCTCACCTGCCACTCTTATTTCATGCTCCCTCCATATGAGAACAAGCAGCGTCTGGAGGCAAAGCTTATTGAAGCAATAGACCACAACCAAGGCTTTTGGATAGAAAATCCAACAAGTGAATCTTTGAATTGATCTTTGAATATTAAGGTCATGCATTGTTCTAAATCTTATGTACCGCTATAacatatatatcattttttgcTTAACAGTCTGCTTGTTATATTAGATTGCTAATCAGACCTGATTTACTAAAATTTCAAATAACGAGCACTAGTTTTCTTGTTGCGGGTGAATTACAAAGAATATTTGCGTGAATTATGTCATTTACAAAGTAGGGTCAGGAAACACTATGTCAGTTAGGTTCTTGCATGTACCATTTGTTCTTATTAGCAGCAGTGAATACAAAACTGAAATTGGCCACACAGGCATAATTGCTTGTCCATTATGACACTGATTAAAGACAATGATACGCATCGAAAAAGCTACAGAATACAACAGAACATAAAAGTATGTTCTGTTCATGAGGTAAAATGTGAATGGAAATCTTTTCACAGGCTTTATTCAAATGTTGTAAGCATCAGAAAGGaagctttctgattatttttggaTTCTAAGGCATAATCTTGAAAAACCTAGTAATTATAAAAACCTAGTGAATAGTATAATTTAACATTCAAATGCCAGAACCAGGCTTCCACAGATATAATACTAATTTGTACATGCAGTCACTATTTCTGAAGTCTGGCTTTCAGGCTGCATTACAGTAAATCAAATTGTGGGTGCAAAACTAATCTCTTTATATTAATATCGCCATGTATTATCCAAGTTTAGGTAGAATTGCACAACATAGCAATTTCATTAATATACATATTACTTATTAACTCCTTTCACTCTGAACAAATACTAACTGATCAAATTCTGTGTAACCAAAGGTTTATTATATCTATACTAAGGTTTACTTCTTGCAACAGCTACTGCAgctgaataaaaaagtaaacacactGTGTCACTAA

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform X4

GO: NA

KEGG:

id description
K22372 HERC5_6; E3 ISG15--protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302954.1 True 4037 mRNA 0.44 23 6643933 6659991
XM_034302955.1 False 4034 mRNA 0.44 23 6643933 6659991

Neighbor

gene id symbol gene type direction distance location
LOC113541261 LOC108263069 coding downstream 2311 6623469 ~ 6641622 (-)
herc5.1 NA coding downstream 23051 6604574 ~ 6620882 (-)
LOC113542150 LOC108263070 coding downstream 41789 6584785 ~ 6602144 (-)
herc3 herc3,LOC107684306,LOC107583224 coding downstream 60798 6549846 ~ 6583135 (-)
elmod2 elmod2,LOC107594343 coding downstream 251411 6384600 ~ 6392522 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding upstream 40333 6700324 ~ 6716263 (-)
aimp1a aimp1 coding upstream 164918 6824909 ~ 6844491 (-)
npnta npnt coding upstream 282706 6942697 ~ 7006034 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding upstream 357466 7017457 ~ 7119620 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 659108 7319099 ~ 7325006 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding downstream 105383 6535704 ~ 6538550 (-)
G41563 NA non-coding downstream 272067 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 341845 6295232 ~ 6302088 (-)
G41300 NA non-coding downstream 767542 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 1042790 5599984 ~ 5601143 (-)
G41768 NA non-coding upstream 17139 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 134588 6794579 ~ 6797620 (-)
G41938 NA non-coding upstream 281249 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 352102 7012093 ~ 7012306 (-)
G42008 NA non-coding upstream 356774 7016765 ~ 7017405 (-)
gab1 gab1 other downstream 824420 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1415966 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1737694 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2034483 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3609380 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 501483 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 778913 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1474650 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1809995 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1810367 8470358 ~ 8470429 (-)

Expression


Co-expression Network