sft2d1 (sft2d1,LOC102776618)


Basic Information

Item Value
gene id sft2d1
gene name sft2d1,LOC102776618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28153128 ~ 28170154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302974.1
ACGTGGTGTGTCATTTGAGGTTCGGCCATTGACACGCCTCGGCCTTATTATCTCAATGTCTGAAGTTTGAGGAAGtgtcaaaataatatttcaaacaaaaagtGTCAGCCATGGACAAGCTTCGGCGGGTATTAAATGGCCGAGAAGATAATGAGGAACTGGGACTTACAGCGCAGGTCCTGGATGCCTCCACGCTCAGTTACAGCACAAGGATCAAATGGTTCATCATATGCTTCGCCTCCGGAGTCCTGTGCTCCATCCTTGGCACTGCACTACTTTTCCTGCCCAAAGGATTGCAGCTGTTTGCAGTATTTTACACCTTAGGAAACATTGCAGCTCTAGCTAGTACCTGTTTCCTGATGGGCCCACTGAAACAGCTGAAGCGCATGTTTGAGCCGACAAGACTCATAGCCACCTGTGTCATGCTGCTGTGCCTTGTCCTGACCTTATGCTCAGTGTTTTGGTGGCATAAAAAGGGACTGGCTATCATCTTCTGCATTTTACAATTCTTAGCTATGACATGGTACAGCATCTCATACATTCCTTTTGCTCGGGATGCAGTCATAAAgtgcttcacttcctgtttgagctAAAGCTGCTTTTCCCAGCAATCCATGTAATGTCCACCcaaaataagcattaaaaatatacatagtaaatatgtaaaatattttactgcaaagattttcatttcttttctgctAATATAAGCCTTATATAAGCCATAATTTACAATATTGAAATATCAGAtgtcctattattttgcattaaaataaacattcatcgaagattactttttttttgtagtatttttatGTATGTGTTCTGGGTCAATGAAAGGTATGTGCcctaaatgaacaaatatttaaGAGTGATTTGTGGTGAGAACCTGCTGTTGGAAGTGCCAAAACTGTGCCTTATTTCTCTGTCTTAAGTTGTACATTAAATGCAacaatttgtgtattttacacacaatcttttttttaaccatttacagaGTAAACTGTCTAACACTGCACTTCTTGTAATAAATGCAATTATTCTCTA

Function

symbol description
sft2d1 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D1 (SFT2 domain containing 1).

NR:

description
PREDICTED: vesicle transport protein SFT2A

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302974.1 True 1047 mRNA 0.39 8 28153128 28170154

Neighbor

gene id symbol gene type direction distance location
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding upstream 4680 28116760 ~ 28148448 (+)
rnaset2 rnaset2 coding upstream 45301 28101372 ~ 28107827 (+)
csmd1a csmd1,LOC106589815 coding upstream 155318 27598114 ~ 27997810 (+)
gsta.1 gsta3,LOC108425408,LOC108425446 coding upstream 615457 27532719 ~ 27537671 (+)
gtpbp2a gtpbp2,LOC108263131,LOC107751133 coding upstream 635441 27507235 ~ 27517687 (+)
prr18 prr18 coding downstream 1775 28171929 ~ 28173521 (+)
si:ch211-130h14.4 LOC108262915 coding downstream 4514 28174668 ~ 28190525 (+)
tbxtb t,LOC107717823,LOC107660241 coding downstream 20745 28190899 ~ 28195563 (+)
LOC113542058 NA coding downstream 145742 28315896 ~ 28317693 (+)
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding downstream 148613 28318767 ~ 28321820 (+)
G53616 NA non-coding upstream 52297 28100613 ~ 28100831 (+)
G53614 NA non-coding upstream 85647 28064643 ~ 28067481 (+)
G53331 NA non-coding upstream 590188 27560172 ~ 27562940 (+)
LOC113542161 NA non-coding upstream 622662 27527865 ~ 27530466 (+)
LOC113541894 wdr92 non-coding upstream 797455 27348910 ~ 27355673 (+)
G53665 NA non-coding downstream 97567 28267721 ~ 28267965 (+)
G53666 NA non-coding downstream 97904 28268058 ~ 28268341 (+)
G53676 NA non-coding downstream 107704 28277858 ~ 28278072 (+)
G53678 NA non-coding downstream 120239 28290393 ~ 28290721 (+)
G53682 NA non-coding downstream 155488 28325642 ~ 28326183 (+)
znf451 znf451 other upstream 945883 27197909 ~ 27207245 (+)
G53328 NA other upstream 1160417 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2288782 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 2306225 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 2558192 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 30881 28201035 ~ 28301823 (+)
G53692 NA other downstream 277223 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 295934 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1542104 29712258 ~ 29748505 (+)
G55091 NA other downstream 1767394 29937548 ~ 29941181 (+)

Expression


Co-expression Network