zgc:152968 (LOC108262836)


Basic Information

Item Value
gene id zgc:152968
gene name LOC108262836
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5357541 ~ 5384816 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303004.1
TTACATAATGCTCAGATGAGGCTTGGACGTGTCTGTGTAATGAGAGCGTTTATTAAAGCGCATCGTATCTTCTTCTGCGATGCGGCGTTATGTGACGTGACTCACGCGTTCTGACTTCTGAGATTACGTGTGTTTGCTTTTCCATCTACCTCACACTGACCAACACTTGCTCGATAACACACTCTTGAATTAGATACCACGCATGACACTGACTAACGCTAAATAAACTACTCCTCAGGACAGcgcatgttctctctctctctctctctctctcacacacacacacacacacacacactttgtagtTTCAGCTCTGACTTTGCCCTCTGTTCTTTCGTGCTTGTTTTCTCCGTGAAAAGCGCCGATGTTTCCTTCCGCTGGACTCTTCTCTGAAACTGACTGTCCTTTCCTCACTTGGGGCGGATGTGAGCGACCTTACTGTCCCTACAAACACgtcaaagaagaagaaaatacagGTGTGTGCGCCGGAAGTGCGCGCGCAGCACCTGAAAAAGGTCATGGCAATCATAATGCTGCTAGTAGAACCTTCCACAACCACGAACAGAGCCAAACTTGTCTTTCAGAGCTGGAAAGGATCAACAAACAGATTGAAGCAGTTAGAAATGAAGtggagaaagaacaaaaaagactGTCCCGCTACCAGTCTGAGCAGGCTGAGAGTGCTGGTGTTAGCTCAGAAGAATATTTTGTAACCAGAAAAACTCGGTCTAAAGACCAGAATGGAAACCAGCTGAAATGTAAAAAGGCCACTCCTGCTGCCCGCAAATACGTTGTTGATCGCACCAAACCAAAAACTGATCTGGAATATGACCCTTGTTCAAATTTTTCTGCTGACCTGCGATCTGGCAGCTCAACAGATAAAATGAAGTCAACCAATAAAGCTGATGTGGAACATGATCAGCGGGACAAAGGAAAGGGTAAGAGTATTTCTGCAGATCCAATTCTTGTTCCTTCTTGCAATTTTGAGGATTCTGATGAGGAGGGGGAACTAGTCATTGACATTCCACCTTTTGAAAATGATGGGAACAAGAGATCTCAGATACAAAGCTCATCACCCAGTGAAAATGCAGATTTTATAAAGATAACCAGGGAATCTTCAGAAATGGCCCCTCTTGATACTGACATGCCACTGCtagaaaagaaagcagaaaagatTAGGCCAGCAAAGAAGGACATGACTAGCATCAATGAACAACAGGAGTCACTCAAGTCCTTGTATAAGGAGACTAATGTGGTAAAACCAAGACACTCCATACcacaaagggaaaaaatgcCTTCTGAAGGAGTACTTGCTGTCAGAAGTATACCTATTGAAGGTGAACAAAAACCCTCAGTTCATCCCAAGATGGCCAAGGAAGAAACCTGATTGTCCAAGAGGATGATGGAGATTGATGCCTTACCTGCAGAAAACAACGAAGTGCTTCATAAGAGCTTGAAACAAAACTTGGCTGCTTCCAAGAATGACAAATGCAAGGAGGAGATCTTGAACTATGCGACTAAAAATTCTCCAGAATTGCATGAAAATACAAGGTCCTTTTCAGTGTCAGATTTTTCACAGGTTGGCCAACTGGAAAAACTTATACCTGCAAACAGTATGAACGCTGGTGTTTATCAAGAGAAAGcacaaaatattgaaaatgttcTAGACGATATTTCCATTTGCCTGGACCACCTGAGGCGGGAAAGTGAGAGCATTGCTTGCCTTCAAGATGTGGATGCTAGCCTCCTTGACACTATCCCTTCTGCTCCCAGTTGCTCAAAGATACATGGAGATCATTCTTTACAGCCTGTCACACAAAGGCTGCAAAGGCGAACAGAACCTGAGGTACAACCAAATAACTGGCTCTCaggtcacattaaaaaaatggacaCCTTGCCCCTTGGACAGTCATCAGAGAACACACAAAAGACATCAGTGTTTCAAGATTACCTTCCCACCACTTCCTCTTTCCAAGCCATAACTAAGGATCCTGGATCTTGTCAGAACACTCCAGCCTCTGCTGACACAAATTGGCCATTTGCCCAGAAAGTCCCAGCGGAACCCGTTGTTCAGAACGTACCTCTGTACGTTTCTGGAACCAGCACCGCAATGGTTCCTTCTCCACATACAGAGCTAAACCCAGCCGCTACATCTGTGGATTTGCCTGGGTGTCAGATCCTGCAGAAACCACCTGCTCTGCTGGGTGCGACAGATAAGATAGCAGTTGACTCTAGTTCTTCAGACGAGCTCAATTATTCAGACCTAGACCTTTCAGAGAGTGATCCAATGGAAGAGTGCTACAGAATCTTTATGGAAGCCAACAAGGCTGAAGATCCCACCGTTCAAGGTGacatgccaGAAGAGGTTTCAAAGATGTCTGAGGCTGAGATGGTCAAGCCAGTTCTTGCTCAGAAAAAGAGAGTAGCCCATGTAGCAAAGTTTGAGCAGGTCAGTAAAAACAAAGCACAGGTCATCGTGCCCCTTAGAGATGGCGGTTTCCAGCTGCCTGTGCCCAGCCAGAGTCAGCAGTGTCAGAAGAGAGCAACatctattacagcagcagtgaaaGGGTGCCAATCCTTTATTGCAGCCAATGCAGCCAAGCGAGTCCTCACACCTACTGTCATTCATCCAACTGCTGTGCCAAACAACTGTGTGAACATCCTCCCGGTTGGAGCGACCTTGCGAATTGGCCCAAACCTTCACCTGATTGTCCCTGAAGGGAGCTGTGCTTTACCGGTCACACTaattcctgctgctgctgtgcctGCAGCACGTCCAGTTCATCAGCCAGCTCCAATCCCACAGCCTGCACAGCCTGCACAACCAACCAACTACACACCTGCCAAGTCAATTCCCACTAAGCGCAAAGCGAGAGGACGTGCAGAGGTTGGCGTAAAGGTTCCTCATGATGTACGGCAGCGGTATGTAAATCTGTTCGTGGAGGAGTTCCTGAAAACATCAGCCACTGTGCAAGATGCCTTTGAAAAGGCACTAGCAGAAGAGAAGACTGTGTTTGATCGCAGCATCAATAAACTGAAGTATCTAAGCATAGCAGTGAATGCACTCAAGAGGCTTAAAAATCAAAATGCAGCTCCTGCCAAATTTTCCAGTGAAAGAGATGCACAAGCGTCTAGAGGAAATGTGCCACTCAATACTCAAGCACTCCTGCAAAATGGTGACACCACACTCTACAATCAGCTGAAGGAGCATATTCTAACCAAGGCCCTGTTGAGGGAGAATAACTATCCTCACAAACACCCCGATAAAGCTGGCTTTGCCATTCAGTATGGTGACGCCAAAAAGGGCAGCACTGATGTTTTCAGGAGAATCTGCTGTCGCTGTGGAACTTCTTTCTCCATTAGCCAGACAGGAAAGCACACTCGCAAAGAAGAGTGCAACTATCATTATGGGAAAGTCATGGAAAACAGAGTACCAGGAGGAGTGGAGACACGCTACAGCTGCTGTGAGAACGCAGTCGGATCACCTGGGTGCCAAGTGTTCAAGCTCCATGTCCATGATGCAGTGAGTCTCCAAGGCTTCGTAAGTAGCCTCCCTCAGACTCAGACTCCCTCAAACCCAGGGATTTACGCTATTGATACTGAAATGTGCTATACCACTCAGGGTCTGGAACTGGTGAGAGTCACGGTGGTGAACAGCAGTCTGCAGGTCATCTACGACACCTTTGTTAAGCCTACCAATGAAGTCATTGACTACAACACCAGGTTCTCAGGAGTCAGTGAGGATGATGTGAAGAACTGCAGTTCATCTTTGCGAGATGTGCAAGCTGTGCTTTTGAGCTTCATCAACGAGAGAACCATTCTGGTTGGGCATGGTTTGGAAAATGATCTCTGTGCTCTGAAacttatccACAGCACGGTGGTCGACACGTCCGTGGTGTTCCCCCATCGCCTGGGTCCGCCGCGCAAGAGAGAGCTCAGAAGCTTGACGGCTGAGTATCTGAGGAAGATAATCCAAGAGAGCGTGGAGGGACATGACACCCAAGAGGACGCGATGGCGTGCATGGAGCTCATGCTGTGGAAGGTGAAAGAGGATGCTAAAGGGAAGAGATGGTGACCTCGGGAAGAAGAACTCTCATCATTGCCCTAATGTGCACTGCTGTATTATTGCAAAATTGCACTTGAAGCTTGCTTTATTATAACAATCCTCACCTGCTGTCTGTATTAGGGTTGCTGGGAATGGAAGCATAGAAATGATTAATTGTtcatacattattcatttttacaccTTTCATTTTGTTGATTATTCACTTTCAGAAAGTAGCGTACCTTTCTTTGTCAGTGGGGTGGTAGTCTTATCGTCTGTAATCGTTTGTACAGTTTAGTATATTACAGCTGGAAATGTGGAAATAGTGTACATAGTGACATAAAATGACTTAAGGTACATAATataatactgtactgtaattaaCCTTTAGATTAAATCTTTCTAAGataaatactaaatatacaAAAGGTGTAGGCTTAAGGGGACCACttcagcaacaaggaaaagtacagtttctttatctttttttttttttttttcctgagagtgtTGAACAccagacattttgttttgtgaagTGTTTTTGAAATAAACTGGTTCACAATTGCACTATGGGAGAAAAAGTATACTTGTGCACTCTGGGATGATGGAAAAGAAAGTAAAGGCACTGCAAAGATCTGCGGTTGTgtgaattctttaaaaaatataatcagtaCTGCCATTTTAGCAGCCCTGCTACATTGTTAACTAATTAGCTGATTCTTTAATTAGTTAATTGGCTTCAAATTCTTTCAGTGTCTGACCCAGTCATGCCTCTGCCTAACATCATTGATTAACTTTCTTTAAACGCGCATTCAATTAGCTACACTTAATTTGCAACTAAATTAACATTGATTAAGGTTATGGAGTAATGCACACGTGACTGTGAATGGCTCTTTACCAATTCCTCCTTCTCTTTGTTGAGCATTTGGATGTTTGTGGTCAGGAAAGTGCTAATTGCTAATTTGGTATCTCAGTTTTGGGAGCCGCCATCTTGGACGACTTGTGCTGTTTGCTGAAGTGTGTCGTCGTTTGGCAAATTAAACTTGAAAGTACTTTGGTTCACGTTTACAGTTTAAATTTATGAGGTATTTACTCCTGGGTTAATGAGCTAACGCGAGGTTTAAATCGGTTTTAACGAGATAATGACGGAggatcaataaataaacagtttctACCGGATCCAGGTGCTAATTTACTTTATACAGTTTGAGGTTTGGAGACAAACTGAGGAACGTGGCATGGCATAGGACTGATACAAGCTAAAGATTTATCGTGAATGACTCAAAATGAGGCAGAATTCAGTCCCGACACACACTGTAGCTCAGCGTTTGATGGGTAAGAGCTTCATTTGAAGATCACCTTAACAGCAGAGCTACCAATGCAAAAGGAGCAGCGTTCTCCTGATGCCAACGGACAGAACTGCCGTGAGCAGGACTGCTCACTCCTAGCCGCTGTCCAGATGCTGCAGGGACgagtgaaagaaaggaaagatgaaGGAAGaatgac

Function

NR:

description
RNA exonuclease 1 homolog isoform X1

GO: NA

KEGG:

id description
K14570 REX1, REXO1, RNH70; RNA exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303004.1 True 5557 mRNA 0.44 19 5357541 5384816

Neighbor

gene id symbol gene type direction distance location
pou4f2 pou4f2 coding downstream 275987 5078360 ~ 5081554 (-)
ednraa ednra coding downstream 412946 4921788 ~ 4944595 (-)
arhgap10 arhgap10,LOC107742542 coding downstream 478732 4785773 ~ 4878809 (-)
fam193a fam193a,LOC103156485 coding downstream 816918 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 884243 4463696 ~ 4473298 (-)
mmaa mmaa,LOC102789515 coding upstream 6340 5391156 ~ 5401649 (-)
smad1 smad1,LOC103023608,LOC107734580 coding upstream 18678 5403494 ~ 5433155 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding upstream 60547 5445363 ~ 5457180 (-)
LOC113541269 NA coding upstream 86141 5470957 ~ 5484612 (-)
hhip hhip,LOC107654904 coding upstream 113624 5498440 ~ 5532480 (-)
G41114 NA non-coding downstream 76318 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 92752 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 546116 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 582888 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 588321 4765079 ~ 4769220 (-)
G41174 NA non-coding upstream 215168 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 491285 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 910416 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 986839 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 1150888 6535704 ~ 6538550 (-)
lsm6 lsm6 other downstream 129574 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 451302 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 748091 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2322988 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 2323604 3033866 ~ 3033937 (-)
gab1 gab1 other upstream 371201 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 1776658 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2054088 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2749825 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 3085170 8469986 ~ 8470057 (-)

Expression


Co-expression Network