med6 (med6,LOC107654960,LOC107602956,LOC107683373)


Basic Information

Item Value
gene id med6
gene name med6,LOC107654960,LOC107602956,LOC107683373
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33694201 ~ 33698292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303125.1
CAGATGTCGTGCTGTTTCcgctgcaaaaaataaaataaaagcctgAATCGCGTCATTTCCTGCGTCTCCTACAAACCAACATGGCGGCTGTGGACCTGAGAGATAACCTGCTGGGGATCTCGTGGGTGGACAGCAGCTGGGTGCCGATGCTGAACTCGGGGAACGTGCTGGATTATTTCTCGGAGAGGAGCAACCCGTTTTACGACAGAACCTGCAACAACGAGGTGGTGAAGATGCAGAGACTCACTCTGGACCACCTCAAgcagaTGGTTGGAGTGGAGTACATTCTGCTACACGCTCAGGAGCCGATTCTCTACATCATCAGGAAGCAGCAGAGACAATCACCTGCACAACtgatTCCTCTGGCTGATTATTACATCATCGCCGGTGTGGTGTATCAGGCTCCTGATCTCGGGTCAGTCATCAGCTCCAGAGTGctGTCAGCAGTTCATGGGATCCAGTCAGCGTTTGATGAAGCGATGTCGTTCTGCCGTTATCATCCATCAAAGGGCTACTGGTGGCATTTTAAAGACCAGGAGGAACGagagaaagTAAAGCCtaagcagaagaagaaagaggagcCGAGTTCACTGTTCCAGAGACAGAGAGTCGACGCACTGCTGCTCGACCTGAGGAACAAATTCCCTCCCATGTTCTACCagcCTAAACCAGGAGAGAAGCCAGTTCCAGtggaggTGAAAAAGGAGGCGGAGCTTCCGGCAGAAGCAGCGAAACAGGAAGAGCGAGAGGTGGCCATTAAACCCCCCGCAGCTTCAGGAACCACTAAACCTCCACCTGAGAAACGAGCACGTctgcagtgacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcagtattaACGCTATATAATGCTGAAGGTGACCGTTTACCAGAAATAAAGTGTCCACACTGTCCTTAACCCAGATGCAGTCGTTCAGCTGAGACGTGTTCTCTGTGTGAAGGCTGATGTTGCTGACCGTAGCACAGTGAACATCTTCACATCTCATCTTCTTCACCACAATGTTCCTTCACCATATTTTCAGATctttttctgtatgttttttccCTCCACCTGAACCCTCACCACAAACCTACccttcttatttttctctctttttttaaacgttCTTGTAAATCTTGTGTTTGTTGTGtaaatagtgattttttttttatacatctggACTTTTGTACAAACTGCAACACAATACtgagtggaagctaatacctgTCATTACACAGGTTGCTAATAGGTGGGTATgtgcttttataaataaatcatttttagagGTTTGGCTGTTAAAAGGaacaaaatgataaattatggTTGTAATTTGTTGAATAAATGATGCGTTGTAGACTCCATTGTTTATA

Function

symbol description
med6 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED6 (mediator complex subunit 6).

NR:

description
mediator of RNA polymerase II transcription subunit 6

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15128 MED6; mediator of RNA polymerase II transcription subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303125.1 True 1398 mRNA 0.46 8 33694201 33698292

Neighbor

gene id symbol gene type direction distance location
pcnx1 pcnx1,LOC108262680 coding downstream 1274 33663814 ~ 33692927 (-)
lgmn lgmn,LOC100304954 coding downstream 37331 33645758 ~ 33656870 (-)
si:dkey-157l19.2 LOC108262993 coding downstream 49983 33610457 ~ 33644218 (-)
LOC113541868 NA coding downstream 101394 33587893 ~ 33592807 (-)
tacc3 tacc3,LOC108440911 coding downstream 177515 33507094 ~ 33516686 (-)
LOC117596872 NA coding upstream 66531 33764823 ~ 33769298 (-)
LOC113541951 NA coding upstream 76264 33774556 ~ 33776425 (-)
G57368 NA non-coding downstream 34180 33656994 ~ 33660021 (-)
G57356 NA non-coding downstream 117354 33575286 ~ 33576847 (-)
G57354 NA non-coding downstream 121782 33571410 ~ 33572419 (-)
G57335 NA non-coding downstream 158226 33535478 ~ 33535975 (-)
G57220 NA non-coding downstream 226894 33465699 ~ 33467307 (-)
G57379 NA non-coding upstream 2928 33701220 ~ 33762528 (-)
G57378 l2hgdh non-coding upstream 4213 33702505 ~ 33704326 (-)
G57390 NA non-coding upstream 29964 33728256 ~ 33737485 (-)
LOC113541873 NA non-coding upstream 63226 33761518 ~ 33764287 (-)
LOC113542143 LOC108263078 other downstream 123965 33562778 ~ 33570236 (-)
trnag-gcc_5 NA other downstream 164204 33529927 ~ 33529997 (-)
mycla LOC108263077 other downstream 169382 33480348 ~ 33524819 (-)
G57322 NA other downstream 231859 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 251386 33423664 ~ 33442815 (-)

Expression


Co-expression Network