elmod2 (elmod2,LOC107594343)


Basic Information

Item Value
gene id elmod2
gene name elmod2,LOC107594343
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6384600 ~ 6392522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303131.1
ACAATGTTGGGATCTATCTGGCAGTGCCTGTATACCAACTTTCTGCGGTTCTGGTTGAAATGGTTTCTCAGACAAATCACAGGAAGATGCGAGCTGCAGCGGATCTGCCACGGATATGAGCCTGGAGCGCCGAGGACTACACGGATCGaaAACTCCTTGAAATCTTCAAAAAACAAGGTGCTGCAAGATGCTGTGAATGTGAAGGAAGATGCAGTGGAGGGCTGTGTGACACAAATCGTGAAAGAGAAGAATATCAAAGAGCAAAAAGATCCCAAGTTTAAGGTGAATCTTCATCAATGCCTTATACAAATAAGTGGCTATAACACCCTGTTCACGACGGTTGAAGAGCTAAGAAAAGAGGTGTTTGACtcagaaaatgaagaacatgAGAAAATGCTTCTTAAGTTGTGGGATTTGCTGATGCCATCCGTTAAGCTGGAATCTCGAATCACCAAGCAGTGGGGAAACATCGGCTTTCAAGGTGATGACCCAAAGACTGACTTCAGAGGGATGGGCATGCTTGGCCTGGTAAACCTTGTgtttttcagTGAGAAATACACTAAAGCAGCACGGCACGTCCTGTCCCATGCCAACCATCCCTCGCAGGGGTACTCTTACGCCATAGTGGGTATTAACCTGACTGAGATGGCCTACAGTTTACTGAGGAGCGGTGCTTTGAAGCCTCACTTCTACAACACTGTGGCAGGGAAACCGCACATGCACCACTTCCACCAGCTTTACTGTTACTTGGCATACGAGTTTGATAAGTTCTGGGTGGAAGAAAAGCCTGCAAGCATCATggagtttaacatttacagagagAAGTTTCATGACAAGGTGAAAGGGCTCCTTCTGGAGCCGGAAGTCTCCCTCATCTTAAAGATTGAATCTAAAAACTGTCCAGATGACTGAGAGTTTTTGTTCTatgactgatttaaaaaaaaaaaaaaaaaaaaagatgactgaATAATAGCTTTTAAGCACATCCCTCTCCTATGCTTCCTGTTTTTAAACACAGTAACAAGTAGCAGATTTATAAACCATAGGATCATTCCTGAGCACAATACTGTAGAGCTGAATTGTGTCACCACCACTTACtaatagaatttttattttggacatacttaaaattattaacaattcTCCTCATACTTGAAATTTGAGTTATATTTATGGTTCCTGTTGGTTTCCTCAGTGTTCATCTCAGGAATTTGATATTTATGACAATAGGGAAAATCGTATATGTTCCAAATGAATCTTGTCTTATGTTAAATTGTCTTACACATGGacaattcagtgtgtttttgcatgttttaatgCTTTGTTTGCTAATATGTTTAGCCTTACTGGACACTAGTTTAGCTTTATAACAGATATTAATGGTTTATGTATTTGATGTGTTATTCTATAATCAGTAACGGTGGAAATACTGTATGGTACTAGTGTTCAAGTTAAAGTCATAGTTTGgcttaaaatgaaatgaaatttacaacattgctttttttaaactataaagAATAACCTTTATAGTTTACCTTAACAAATAAGGGAACCTTATAGTGTCTGATTTAGCACTGTGCACAcactttcttaaaaaaagatatcatgTAGCTgtcagcatttttattattatttttttttgcattttcatcattttgtctCAGAGAGCTTCAGAATTTGGACCTCCTACCTGAGGCATTGTTTGTACCAAGTGCCACCAAACTACGTgctaaagaa

Function

symbol description
elmod2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ELMOD2 (ELMO domain containing 2).

NR:

description
ELMO domain-containing protein 2

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K23538 ELMOD; ELMO domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303131.1 True 1737 mRNA 0.39 8 6384600 6392522

Neighbor

gene id symbol gene type direction distance location
znf330 znf330 coding downstream 116889 6253523 ~ 6267711 (-)
il15 NA coding downstream 141461 6229644 ~ 6243139 (-)
usp38 usp38 coding downstream 543830 5825410 ~ 5840770 (-)
hhip hhip,LOC107654904 coding downstream 852120 5498440 ~ 5532480 (-)
LOC113541269 NA coding downstream 899988 5470957 ~ 5484612 (-)
herc3 herc3,LOC107684306,LOC107583224 coding upstream 157324 6549846 ~ 6583135 (-)
LOC113542150 LOC108263070 coding upstream 192263 6584785 ~ 6602144 (-)
herc5.1 NA coding upstream 212052 6604574 ~ 6620882 (-)
LOC113541261 LOC108263069 coding upstream 230947 6623469 ~ 6641622 (-)
LOC117596878 LOC108263069 coding upstream 251411 6643933 ~ 6659991 (-)
G41563 NA non-coding downstream 12734 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 82512 6295232 ~ 6302088 (-)
G41300 NA non-coding downstream 508209 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 783457 5599984 ~ 5601143 (-)
G41114 NA non-coding downstream 1103377 5277951 ~ 5281223 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 143182 6535704 ~ 6538550 (-)
G41768 NA non-coding upstream 284608 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 402057 6794579 ~ 6797620 (-)
G41938 NA non-coding upstream 548718 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 619571 7012093 ~ 7012306 (-)
gab1 gab1 other downstream 565087 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1156633 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1478361 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1775150 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3350047 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 768952 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1046382 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1742119 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 2077464 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 2077836 8470358 ~ 8470429 (-)

Expression


Co-expression Network