kcnma1a (kcnma1)


Basic Information

Item Value
gene id kcnma1a
gene name kcnma1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18227260 ~ 18372489 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303143.1
gctcaGTGAGGGAAGCGGAGCGGCTGACAGGGACAGCACTGTTCACCCTGTCAGCTCCGACTCAGTAAACATTCAATAAAAACAACGCTGTTTCTTGTTCGAGTCGCAAACAGCTGAAATGTGAAGAATTTGTCCTCTgaaatctttttgttttgcGGACATTTATGATTAAGTTGGCGTCTGTGAGAGAAATATCGATTTGTCGCCGCTGTCCCTGGATGGAAGACCTTGATCTTGGAGGCGCTCGAGCTGACTGAAGAGCTGCGTTTATTCTGCTCTTATAAAGCTTCAGGTCTGAGAAGAGCATAAAGACAACTGACATAAAATGCCTTCATGGCTCATATTCGCCGTTTATTTCGAATATTTTGAAAAGCTCTGTGAAAAGTCGTCGTTAATGCGGATTTAAATGTGTCGCGCAGAAGGACCTCCTGTTTCTCTGCTGATTTCACACGCAGCGACATTTTGGGTTAAAGATCATCACTGATACTGAGGAGAAATTGGGCTAGAGAACGCCACTGTTGCGCAGAGAGGGCTATTTGAAGCAATATGGCTGATGGCTGGGGCTGGGGGCGCTGGCAGGAGCTCTCCAAAGCTACTCGATGCTAGCTGTGGCAGATCGCAACCTTTCCCGCGGCGGCGACGGCAGCTCTAGAATGACTAATAATATCAACTACAATAAAAACTCGGACTCTTCTGTCTCCATATCCAGGATGGATGTGATCATCCCGTTCTCCCCAGACGTGCCGTGCGATAGCAATGGCCAGCGCATGTGGTGGGCTTTCCTCGCCTCGTCCATGGTGACGTTCTTCGGGGGTCTCTTTATCATCCTCCTGTGGAGGACCCTCAAGTACCTGTGGACTGTCTGCTGCCATTGTAGCATCAAAAACAAGGAGGCCCAGAAAGTGAATAACGGGCAGGCAGATGGGCCACTGAAGAGCCAGGATGAGAAGGATGATGCGCCAGCTAGTGAGGTGGGCTGGATGACCTCAGTAAAAGACTGGGCCGGAGTCATGATCTCAGCACAGACTCTCACAGGCAGAGTACTGGTGGTGTTAGTCTTTGCTCTCAGTATCGGAGCCCTTGGAATATACTTCATAGACTCGTCTGACCCCATAGAATCCTGTCAGAATTTCTATAAAGACTTCACCTTACAGATCGACATGGCCTTCAATGTGTTCTTCTTACTCTACTTTGGCCTGCGTTTTATTGCAGCAAACGATAAGCTGTGGTTCTGGCTGGAGGTGAACTCTGTGGTGGATTTCTTTACTGTGCCACcggtgtttgtgtctgtgtatctTAACAGGAGCTGGCTGGGTCTGAGATTTCTAAGAGCCTTGAGACTGATACAGTTCTCAgaaattttacagtttttgaaTATCTTAAAAACAAGTAATTCCATCAAGCTGGTGAACCTGTGTTCCATCTTCATAAGCACATGGCTCACAGCTGCAGGATTCATTCATCTGGTGGAAAACTCAGGGGATCCTTGGGAAAACTTCCAAAATTCTCAACCACTTTCATATTGGGAATGTGTGTACTTACTCATGGTCACTATGTCTACGGTGGGATACGGGGACGTCTGTGCGAAAACCACCCTTGGCCGACTTTTCATGGTCTTCTTCATTCTTGGCGGTTTGGCCATGTTTGCCAGCTACGTCCCTGAAATCATAGAGTTAATAGGAAACCGCAAGAAATATGGTGGTTCCTATAGTGCGGTTAATGGCAGAAAGCATATTGTGGTCTGTGGTCATATCACACTCGAAAGTGTATCCAACTTCCTTAAAGACTTCCTACACAAGGACAGGGATGATGTCAATGtagaaattgtttttcttcataaTATTTCCCCTAATCTTGAGCTGGAAGCCTTGTTCAAACGTCACTTCACTCAGGTGGAATTCTACCAAGGATCTGTTCTTAACCCACATGATCTAGCTAGAGTCAAGATTGAGTCAGCGGATGCATGCTTAATTCTCGCCAACAAATACTGTGCAGACCCAGATGCTGAAGATGCATCGAATATAATGAGAGTAATATCCATCAAGAATTACCATCCAAAGATAAGAATAATCACTCAGATGTTGCAGTACCACAACAAGGCCCATCTGCTAAACATTCCCAGCTGGAACTGGAAGGAGGGCGATGATGCGATCTGCCTGGCCGAGCTGAAGGCGGGCTTTATAGCCCAGAGCTGCCTGGCACAGGGCCTGTCCACCATGCTTGCCAACCTGTTCTCCATGAGGTCATACATCAAGATCGAAGAGGACACATGGCAGAAGTATTATCTGGAGGGAGTGGCCAATGAGATGTACACTGAGTACCTGTCCAGTGCCTTTGTGGGCCTTTCTTTTCCTACAGTTTGTGAgCTGTGTTATGTGAAGCTCAAATTGTTGTTGATCGCTATTGAATACAAGTCAGAGCAGAGGGAAAGCAGAAGCAGAAAGCGTATTCTGATCAACCCTGGGAACCATGTAAAGATGCAGGAGGGAACCTTGGGATTCTTTATTGCCAGTGATGCCAAAGAGGTCAAAAGAGCATATTTCTACTGCAAAGCTTGTCATGATGACATCACAGATCCCAAAAGGATCAAAAAGTGTGGCTGCAAGAGACTGATATATTCCAAGATGTCCGTCTACAAGCGAATGAAACTGGCATGTTGTTTTGATTGCGGGCGCTCTGAGCGCGACTGCTCGTGCATGGCAGGCAGTGTACATAGTAACATGGACAGCCTTCAGAGGGCCTTCCCActttcttctgtctctgttcATGATTGCTCAACCAGTTTACGTGCCTCCAAATATAAGTATAACGGATATGTTACATCACCAGCAGATGGCGCTACAACTCCAGGGAAAACAGGAGGTCAGAGAGAGGCTGGGGTTCGGTTCAAAGCAGAATGGATTTTAGTTGAAGACGAGCATCCATCAACGCTGTCACCCAAAAAGAAGCAGCGCAACGGAGGCATGCGAAATTCACCCAACTGCTCACCCAAAGTGATGAGACATGACCCTTTACTTATTCCAGGAAATGAGCAGATTGAGAATATGGACGTTAATGTGAAGAGATACGACTCCACTGGAATGTTTCACTGGTGTCCTTCTAAAGACATTGAGAAAGTCATTCTGACGAGGAGTGAGGCCTCCATGACGGTTCTGAGTGGACATGTCGTGGTCTGTATATTTGGAGATGTCACTTCTGCTTTAGTGGGGCTGCGAAACTTGGTGATGCCTTTAAGAGCGAGTAACTTCCATTACCATGAGCTGAAGCACATAGTGTTTGTAGGCTCACTGGATTATCTGAGGAGGGAATGGGAAACCCTTCATAACTTCCCCAAGGTCTCCATCTTACCCGGCACACCATTAAGTCGAGCTGATTTAAGGGCTGTAAACATCAACCTCTGCGACATGTGCGTTatcctgtcagccaatcagaacaaaaTTGACGATGCTTCACTGCAGGACAAGGAATGCATCTTGGCATCACTCAACATCAAATCTATGCAGTTTGATGACAGCATTGGGGTCTTGCAGGCTAATTCCCAAGGTTTTACACCTCCGGGAATGGACAGATCGTCTCCAGACAACAGTCCAGTGCATGGGTTGGTTCGCCAAGCATCCGTCACCACTGGCTCCAACATCCCAATCATAACTGAGCTAGCTAAGCCTGGCAAACTACTGCCTTTGGTTCCATTCagtcaggaaaaaaacagtggaaCCAACATACAAATGATAACAGAACTGGTGAATGATTCAAACGTTCAGTTCCTGGAccaagatgatgatgatgacccGGATACAGAGCTGTATCTGACCCAACCCTTTGCCTGTGGGACAGCTTTTGCTGTCAGTGTGCTCGACTCTCTTATGAGCGCTACGTACTTCAACGATAATATCCTGACTCTGATCCGGACGCTGGTGACAGGAGGGGCCACGCCGGAGCTGGAGGCGCTGTTGGCCGAGGAGAATGCACTGCGCGGAGGATATAGCACGCCGCAGACGCTAGCTAACAGGGACAGGTGTCGCGTGGCACAGCTCGCCCTCTACGATGGCCCTTTTGCAGACTTGGGGgATGGTGGTTGTTATGGGGACTTGTTTTGTAAAGCATTAAAAACCTACAACATGCTGTGCTTTGGAATCTATAGATTAAGAGATGCACACCTAAGTACGCCGAGCCAGTGCACAAAAAGATATGTGATCACCAACCCACCCTACGAGTTTGAACTCGTCCCCACAGACCTGATCTTCTGCCTGATGCAGTTTGACCACAACGCAGGTCAGTCGCGAACCAGCCTGTCCCATTCGTCCCATTCCTCACACTCATCTAGCAAGAAGAGCTCCTCAGTTCACTCTATCCCTACCACCAACCGGACCAACCGCAGCAGCAAGACCCGCGAAAGCCGCGACAAACACAAtgcaaCAAGGATGAATAGAATGAGCCAAGAAAAGAAATGGTTTACAGATGAACCAGAAAATGCCTACCCAAGGAACATTCAAATCAAGCCCATGAGCACTCACATGGCCAATCAAGTCAATCAGTACAAATCCACTAGCAGCCTGATTCCACCAATCAGAGAAGTTGAAGATGAATGCTGAATCCCAGGCTTTTGACGAGCTGGAGCATCCTGATGTAAAAGATGAGCAGTGATGAAGAAACGGTGATGATAATAGCGATTCACTGTCATTTTACACCTTGAGAGTTTTTTTGTGATCATGGAAACTAGAAGGGACCTCCTATGTGTATACCTTTAATGTTACTTCCATGCTTttggaaacatttaatttataaatgtatacataGTGATGTACATAATGACAATCAAATAAGGATTGTACAGCCCTCTAGCACTTTTTGAAATTATGTTAAAACAGTAAAGAAGTACTTCCTGTAATTCATTGCAATATCTCGTGTCTGCAGTGACCTGACTCTGTGCAGAAGGCTTTGTGTTATGGAGGATGAGGGTCACAGTCCTTCAGCTTGTTAACGTTACCCAAAGAACCTCATCTGAAGTGTCGCTTAAGcccctctacacacacatacatgcgcCCTCAtctgcttcttctttttgcaCTAAATGTAATAGTGGAAAAACTTGAGACTGGGTTCTGAAAGGATTGTAAACGTTTCTGAATTCACAGCGCAGTGAGTAAACTTGCTGACTGACCGTGGAGTGGCTCTGTTAGGAGAAGCAACTGTTAAAGGTGATGAGTGTTGCTTGAGGGGCCTCAGTCCTGCTTTGTGTGGAGAAGCTTTCATTTGAGTAAATGTTGCACACAACCTGGACATGCAGAGCGGGAAATTGAATTCATTTCCATGCACATAAACAGTGTAGGTCATCGTATACGGGAATGTACTTATCATGTTCATGTAATAATGCAAGAAGTCATCTCCAGCGTAGCCCTACTAAATTGGCAATACATTATCAGGATATGCACTACTTTTGTTGATGTCTTTCCATCACGCTTGACTGCTGGTGTTGCTGTGGTTGTTAAAGTGTATGATCAAGGCTCATAATGCGATTGTTTGGAAGAGGCACAGGAATCGAAtacttgtgcatgtgtgtgctggtttacacactgcactcacaTGCTGATAATGCCACTGTGATTGAGCTTTCAAAGCATATTTAACATTCTCTCTGATTTTGAATTAAAGAAGAAACTTGGAATGTGTAGTGTGACATGCCACATATTGCGAAAAGTGGGCATACATGGTTCCTCCTTCTGATTGGTCCCACTGCCTGACACAGTGTTGGCACAGAGGCAGAGACATGCTTGGATGTTCTCTGTGACCAACCATGATGCCTCAATAGTACAAGAACCTACAGATATACACAAGTGAAACTCAATCATAGTTGTCATTATCATGTAAAGAGAATGTTGgacagtgtgttgtgttgttctgCTGTTAGACGGGACAGAATGAACtccactacacatcacactggaACACGGTGGTGTGGTGAGCCTTTATGTGGGAAGTGTAATAATATACATATGTTAAGCAGAATTTTGCTTGAAGTGTTCTGTCAGATTTATACATACTGTACGTACATAGttattttttatccatataaGCATAATCATTTTGtacttatttttatacatatcgAAGaactttatttctaaaattatCTTAAATAGATATTAACAAGGCTTCAGTACACACCAGTTAAGTTTGTTGTCCATTTTTACCCTTGGCAACCGAACATATCATGCTTTTAAAAGGACAAACGTACTGTCCGTTTCGTGCTACAGGAGACAGTCACAAAGTTCCAGCTTTAGCTCTCCATCTGCTTTTCTGGGAGAGTACTTTAATACTCGATACTTGAGCTGCTTTGAAGGACCTAGTTATATCAATTACAATATTCTATTATTCATTATTGGCTGAGATAAACTATTGATACAGTAATTAGATGTAAACTGTAGTATAATTCCAAGCTGAAAGTGAAAATTGATGGTGAAAATGTGCATGAGAATGGGTCATTGCCAATGGCTTGcatctactctctctctctctcagggtagAACTGATCGTTACCACTGATATTGACCTAAATTAGGTCTCAGGAAACAGAGTAAcatgctgaaatattttcatgtgattaaCTGTAATACACTTTAAACTGTGTTTGAAATGGCACAGTTGGAAGATGTGCAGATCGCCTCAGTCAGTGAGCTAATCACCATCTAATGCTagatataagaaaaaaaaacatcgcgATTTTACTACtgaggaaaaaatatgataatgCTTAGTGTTGAAGTATGTTGTGTAAATTCTGCCCATTTATAggccacattttattttttgaagaaCAAGGATCTCAGCTTTAATGTTTGTCCTCTGGATGTAGTTTGATCCTAATGCAGCCCAATAGGCTCTGTCCTCAAGTGATTTTGAATTGTGAATACATGGATGTTACACTTTGTAGCAAGTAgacttcttttaaaaatgtgagtaaactgtatgtaaaattggattgttaaataacatactTGCTAGTCTGGGGAAAAAGGATTCAGACttaaaatgaatcataaatCACAAAATACTGGAGTCATTTTTTAGAGGATTTGTCCAAGATTCTTTTCCTGTAATGAAACTCATGCACTGCATTGCAAAAATGAGCTAATGTACGGTGTAGAAAGCAGGTGAATTGATGAATGTTTTGAGTGAAGCTAATTTCAGAGTTGGTATACTGTAATTTCAGtttgttatttctttaatatCAGCGTTTACATTCCATATTGCCAGTTTTTAAGCAATTATATGTTATAGTAATAAAGTCATTGTTTAAACACTCACTACCACCTATTTGTTTACAGATATAACATAATAATTAGTATATatcaggaatgttttttttcctctgttggtagatttagtttttttcttttttctttagacAGCTAATGTCTGTCCACAAAGTGATAAACAAGACTTGTCCTTCAGCTTGACTTTCTTCTCCAGTGTGCAACAAGAGCCACAGCAGttccatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgcctgctgtGAGGTGAAACCACTGTTCTCTACATATCAGACTGTCTAAAGTGCCATGACATTGTCTCTAAACCAGCATCTTTCAGTCAGATGTTAAAATCATGAAGAGATTTTTTGTGGCATCTAATCCTGGCATGGAGAACATCCAAGCCACGCAAGCCTCCATGCCAGGGCAGTGCAGGCAGGGCTGCAGTCAGACTGAAGGAGGAACGTCTGAAGACCCACTAAAGCGAAAAGTGGCATCTAAAGAGAGCTTAAAGTTTCAGTTATAAAGCCAGACTCTACTGATACATATATAACCCCATAAATATAAAGcagcaaaacacactgactgaaaAATGCTGGGCACTAAATgagttttaatgtgtttgtatggTCATCTGTCCACTTGTTAAAGAGTGTTATTTCAGACAATTATTCTACTGTAAAATCGGCTGTCACTACAACATTACAAACTGTATTGAATAATGTGCTGTAAGGGAATTAAGTCTTAACTGAAAGTGAAACCTAAGCTGAAACTGCTttgggaactttttttttctttttaataaaaattcagaACATTCAATTTCCATTTAATTATTTGGCTGTTCATTACAGGAAAAAGGAGTTTGAACTGTTTTAGCTActggagaaatggagaaattgATGGTGCTGAGTTGATCTACCTGACTCTGTCAAATATAACCTGCTGATAAACATACTGTCTTGTACAAAAAGTTTGTACATAAATTGTACatgtttctttttgtattttctcaaATTAAAATGGATGTATTTGTGTTCTAA

Function

symbol description
kcnma1 Enables actin binding activity; identical protein binding activity; and potassium channel activity. Involved in several processes, including cellular potassium ion homeostasis; negative regulation of cell volume; and smooth muscle contraction involved in micturition. Located in apical plasma membrane and caveola. Is integral component of membrane. Part of voltage-gated potassium channel complex. Implicated in Alzheimer's disease and idiopathic generalized epilepsy.

NR:

description
PREDICTED: calcium-activated potassium channel subunit alpha-1 isoform X46

GO: NA

KEGG:

id description
K04936 KCNMA1, KCA1.1; potassium large conductance calcium-activated channel subfamily M alpha member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303143.1 True 8331 mRNA 0.43 36 18227260 18372489

Neighbor

gene id symbol gene type direction distance location
anxa11a anxa11,LOC108263209,LOC106613295 coding upstream 54073 18158463 ~ 18173187 (+)
mocos mocos coding upstream 77520 18140689 ~ 18149740 (+)
fignl1 fignl1 coding upstream 168094 18056126 ~ 18059166 (+)
klc1a klc1 coding upstream 180393 18018395 ~ 18046867 (+)
LOC113543388 apopt1 coding upstream 211480 18011815 ~ 18015780 (+)
znf503 znf503,LOC107708443,LOC107747464,LOC103355656,LOC102798683 coding downstream 246740 18619229 ~ 18622295 (+)
comtd1 LOC108444215 coding downstream 311007 18683496 ~ 18686611 (+)
ifit8 LOC108263543 coding downstream 315988 18688477 ~ 18691778 (+)
LOC113538988 LOC108263544 coding downstream 323231 18695720 ~ 18699679 (+)
tet1 tet1 coding downstream 480213 18852702 ~ 18883431 (+)
G48494 NA non-coding upstream 4713 18222068 ~ 18222547 (+)
G48478 NA non-coding upstream 52761 18174300 ~ 18174499 (+)
LOC113541886 NA non-coding upstream 142461 18081617 ~ 18084799 (+)
G48323 NA non-coding upstream 240689 17986281 ~ 17986571 (+)
G48305 NA non-coding upstream 285938 17902052 ~ 17941322 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 88184 18460673 ~ 18462196 (+)
G48482 NA non-coding downstream 300822 18673311 ~ 18701906 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding downstream 335543 18708032 ~ 18711295 (+)
G48908 NA non-coding downstream 594917 18967406 ~ 18967777 (+)
G48911 LOC108263518,LOC108262933 non-coding downstream 598309 18970798 ~ 18974710 (+)
dlg5a dlg5 other upstream 5210 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 1250231 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1759910 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1918362 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1989718 16234514 ~ 16237542 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 529949 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 654479 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 841718 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 883575 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 968861 19341350 ~ 19356098 (+)

Expression


Co-expression Network