ly6pge (si:ch73-28h20.1,LOC107673896,LOC107585320)


Basic Information

Item Value
gene id ly6pge
gene name si:ch73-28h20.1,LOC107673896,LOC107585320
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15157757 ~ 15160085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303147.1
TCTCTGTCGTATAAACTCAGAGGTTTGTACGAGAACAACCTGCTTTTCACTGATCAATCTGGTCAGCCCAAGACCAACAGCAACATGAATGCTGTCCAATGCTGCTGGTTGTATGGCCTTTTCCTTCTACTCTGCTGTGTTCATAGTGAGGCACTGCACTGTTACACCTGCATGGGGTCAACAGATGAGGACTGCAATCAGCAGGGATCCAAAGCATGTCCAAGTTACTCAGATGCATGTGCTATTATCAAAGGAGATGGCAGCGGTGTGCTGAAGTCATGTTCCTACAAATCCTTCTGCAGTCAAGCTAACAGCCAAGGTGACAGAGTTGCAGGGGTGAAGGTTCACTGCTGCTACTCAGATGACTGTAACCTGATGGGACATGGCACCCAGCTCAGCAGAGGGTTTAGCTATCTCTTAGTCCTTCTGCCACTGTTTTGGCATCTATTGTCAAGCTAAAATTGCCAGCACAAGCTTAAATGTGCTTCATACAGGGGAAGTCACATTATGAAATCAGTAGCCTTTAAGTGTAataatgtctctgattaagtATAATGtcttaaatgtaataatgtccGTGCCTA

Function

NR:

description
ly6/PLAUR domain-containing protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303147.1 True 584 mRNA 0.45 3 15157757 15160085

Neighbor

gene id symbol gene type direction distance location
tacc2 LOC108263494 coding upstream 1014 15091830 ~ 15156743 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding upstream 66880 15085196 ~ 15090877 (+)
prom2 LOC108263179 coding upstream 79700 15059462 ~ 15078057 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding upstream 98978 15034063 ~ 15058779 (+)
polr1c polr1c,rpac1 coding upstream 127942 15024924 ~ 15029815 (+)
unc5b unc5b,LOC108263852 coding downstream 99278 15259363 ~ 15322047 (+)
myofl LOC108263542,LOC108442891 coding downstream 165147 15325232 ~ 15354413 (+)
parga LOC108263327 coding downstream 195732 15355817 ~ 15386394 (+)
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding downstream 228411 15388496 ~ 15413390 (+)
lrit1a LOC108262901,LOC108442250 coding downstream 287338 15447423 ~ 15450880 (+)
G46765 hps6 non-coding upstream 73447 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 142576 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 145768 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 531267 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 769446 14388029 ~ 14388311 (+)
G46833 NA non-coding downstream 258944 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 313116 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 551052 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 733496 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 873219 16033304 ~ 16035339 (+)
borcs7 borcs7 other upstream 183689 14972568 ~ 14974068 (+)
cgas NA other upstream 789657 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 871215 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1656707 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2123407 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 633321 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 910629 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 964542 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1074429 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1125037 16285122 ~ 16308898 (+)

Expression


Co-expression Network