arhgef38 (arhgef38)


Basic Information

Item Value
gene id arhgef38
gene name arhgef38
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1038675 ~ 1061874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303152.1
CAAACTCAGAGAGTCAGTGTACACAGTAGCAACAGGAGTGCTGCACCTGTTcctcttctctgtgtgtgtgtgtctctctctctctctctctctctctgtttctctctgtgtctcactcccCCTTTCATTCGGGGGAGGGGGGTCAACCAAGGAATGGATCCCAAGGAATGTGATGGGAAtgacagagagaatgaaaaagaggagaagaaagagaaggacaggagGATTAAGAGAAGGCCCTTTCTCAGGTACCTGGAGAGGAGGAGGACGGACACCATCGTGGACGATGACTCGGGGAAAGGGGACGTCAACATCAACACACTGGTGCGCAGGAGCCAGTCCGATAAGACCGAGTACAGCGCCAAACTTAAAGGAAAACTTGCAACCCATGAACTCCCATCTCCCTTACTGGAGCCTGAGGAGATCCGTCACAGGAAGATGGtgaaaaggtcaaaggtcatagAGGAGCTGGTGAGGACGGAGGAGGATTACCTGAGAGACCTGGAGCTGTGCATCAGGGAAGTGCTGACACCTCTACGCAACACACAGgtggtgGATGTGGAGCGTCTCTTCACCAACATGGAGTCTGTGAGCGCTGTATCAGCCGAGCTGCTGCACAGACTGCAGGAGGCCACAGCAGAACCTGATCCAGAAACACAGCTCataggggagGTGTTTATCCAGGCGAAGTGTGCGCTGGAGGGCGTGTATAAGATTTATTGTTACCACCACGACGAGGCCAGCGCTCTGTTAAAGAGCTACGACACGCAGGAGGAAGCACAGCAGCAATTCAGGACCTGTATATGTGCACTCAAGCAGATTTACGACCAAGAAGGGAAATCCAACCTCCTAGACATGGGGTCTTTACTCATTAAACCTGTGCAGCGTGTGATGAAATACCCGCTCCTATTGGCTGAGCTGCAGCAGGCCACGCCCATCGATCACCCTGACAACCAGCCACTACAGGAAGCGTTAACGACATCGAAGATCATCAACGCCAACATCAACGAGTTCAAGAGGAGGAAGGATATCGTGATGAAGTATAAGAGGAGCGATGATGAAGGAACACTGAAGGGGAAACTGAACAAATTCAACATCCACTCCATCAGGAAGAAATCCGAACGCATCACCGGCTACTTCAAGATCCTCACCGGTGTGGAACCGCAGGTGCGTGATGAAGCCTTCGACAGAGAGGAGAAACTCTTCCGTAATCTGGAGAAAGCCGTCAGACAGCTGATCAAAAACCTCAACGTCTATCTGCTGCATGCACAgGACATGATCGCGTTGGCGGTGCAGGATGTGGAGGATTTAGAGGCCATCATGAAGGATCCTGATAAAATCGACACCAATGGTTTTCAGCACAGGAGGAACGGTCACGATCCCTATAAACACCTGGTGGAGCGGTTGGAGAGGTTGGTGCTGTCCCCTTTGTCCTCTCTACAGGCCATGTTCTCGTCCCCTCAGAAGCTGATCCAGAAGCGTTACGATAAGCTGCTGGACTCGTGTTCCTCAGGCAGCGAGGAGCAGCTTCAGGCTCAGCGTGACTACCAGGCGCTAAACGATCAGCTCACCGTCGACCTGCAGCGCTTCAACCACGCCGCTCAGACCATCCTCACCAACTGCCTGCTCAGTGTCATCAAGCTGCTCAGGGAACTGACCGAGGGGGCCAGACCGCCCGTACACCAACTTCCTGCTCCTCTGTCAAACATCAGCGAGGTGCAGAACAGCATCATGGAGGAGATCAGCAACCTGATGTTCTTCAGAGAAAACTCACAGAGACTGATGGAGAGGAAAGTCAGCTTTGAGAAACGAGAGAGGAAAAACATGgcAGTGGAGTGTGTGCAGCCCCAGACGGAGAGTGAGAGGTCCAAGCTGATCTCTCAGTATCCTTCTAATTGTCTGTACGAGCTGAAGAGGAAGTGTAACGCCACTCAGGATCAGGATGTCACGCTCCTGCAGGGGGAACTGGTGGCCTTACTGGAGGACCACGACCCGTTCGGCAGCGCCTCCCGCTGGCTCGTCGACACCGGGAgcacgCAGGGCTACGTGTACTCCACCTTCCTGAAGCCGTATAACCCTCAGCGAGACGTTCACCACGAGCGCTCCGATGATTTCGACAATCTCAGTCTGTTCGTGTCAAGCAGCAGGAGGGGCAGTCACTCCAGCTACAGTCCGTCCACTCCGTCCAGCCAGCAGGGGGAGACACCGAGCACAGAGGACGAGGAGCAGCATttcTACGCGGTGTACGCGTTCGTGGCGCGCTGTGAGCAGGAGCTCAGTCTGCAGGAGTACCAGCACGTCCGCATCCTACAGTTCTCCGACCTCGGGGGAAACAAAGACTGGTGGCTCGCTGAGTCCAACGGCCAGAGGGGCTACGTCCCCGCTAACTACCTCGGCAAGATGTCCTACGCCTGAGGACACGACACCACACCCAGGCCGTGTTCCAATAACACACACCCTCGCTCCCTTCCCCTCTTAGTGTCTCTCACTTCATCAGCAACAGTGAAGTGTGTTACAGGTTACAGGAGGAGTAAAATAGGGTCCATCTGCTCCTCTTAACGTCTCCAAATGCACTGTGGTGGCCTACATAGTGTACaatgtgtggattgggacacacccacagtggactgatgtttaaatggactatatagtgaataggggatatgtggtttgggacacgcccacagtgga

Function

symbol description
arhgef38 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in Golgi stack and cell junction. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 38

GO: NA

KEGG:

id description
K20711 ARHGEF38; Rho guanine nucleotide exchange factor 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303152.1 True 2691 mRNA 0.54 14 1038675 1061874

Neighbor

gene id symbol gene type direction distance location
LOC113524625 LOC108263780 coding upstream 13330 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 49871 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 336108 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 349172 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 349889 669887 ~ 688786 (+)
uso1 uso1 coding downstream 10863 1072737 ~ 1094921 (+)
hemgn NA coding downstream 100745 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 110011 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 117604 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 187199 1249073 ~ 1257956 (+)
G38571 NA non-coding upstream 45380 993009 ~ 993295 (+)
G38570 NA non-coding upstream 46075 992241 ~ 992600 (+)
G38566 NA non-coding upstream 62980 975350 ~ 975695 (+)
G38564 NA non-coding upstream 68325 970143 ~ 970350 (+)
G38563 NA non-coding upstream 78997 959420 ~ 959678 (+)
G38585 NA non-coding downstream 6373 1068247 ~ 1069317 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 57420 1119294 ~ 1153326 (+)
G38593 NA non-coding downstream 74790 1136664 ~ 1137026 (+)
G38596 NA non-coding downstream 96552 1158426 ~ 1159328 (+)
G38608 NA non-coding downstream 188926 1250800 ~ 1772777 (+)
mtap mtap,LOC108263789 other upstream 293676 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 824946 200601 ~ 213729 (+)
G38577 NA other downstream 2098 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 40904 1102778 ~ 1141934 (+)
trmo trmo other downstream 103971 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 132345 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 921773 1983647 ~ 1997265 (+)

Expression


Co-expression Network