LOC113541870 (LOC108263097)


Basic Information

Item Value
gene id LOC113541870
gene name LOC108263097
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31519040 ~ 31524900 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303155.1
CCTCCTTCACCCGTGAATGCTTTCAGCGCTCTGTTCAACCAGGTCAAGATTTACATTTAGAAGACAGggaTCTGGGATGATGTTTACCACACCTAAAATACAACAGCTTTGCCTGGTATTGACTTGTTGGCTTGGAGGACTATTCTCTtgcttgttgttttttcagtatTCCTCACCATCATGTGCACCTCAACACATTCCTTCTTATCAGCCCGACGTTTACAAGAACTTAACCATCAATCCCACTTCTGCTGCAACTCAGGCTAAGGAGGAAAAGCCCATCCTTCTGCTGTGGTTCTGGCCTGAAAACTACAAGTGGGACTTTCGTGACTGTAAAACCATATACAACATCGACGGCTGCCATTTGACTGATGACAGAAACCTTTACAACCAAGCAGACGCAGTCCTCATTTTCCACAAAGCTATCAAATGGGATCTGTCTAACCTTCCACCTTCTCCTCGGCCTCCATTTCAGAAATGGATCTGGCTTCATGTAGAATCGCCGACCAACACGCCAAAGATACCAGGTTTGGAGAACCTTTTCAACCTCACGCTGAGCTACAGACGGGATGCAGACATTTCTGTGAGATATCGACTCACTGTCAGCAAAAAGCCTAATGAGGACTTCGTGATCCCAAAGAAGGACAAGCTCCTCTGCTGGTTCGTGTCCAACGTTGCCAGCCATACAGGAGTAGGGACCAGGATGCAGTACTACAATGAGTTAAAGAAGTACATCGATGTGCgcatttttggaagaatggcTGGAGCGCGCTTGAGAGATGAAGACTACTACTCCACTATGGCTACCTGTAAGTTCTACCTTGCTTTTGAGAACTCCATTCACAAGGACTACATCACAGAGAAATTAAACGGTCCTCTCGCAGTGGGAACCGTCCCTGTCGTCATGGGGCCTCCAAGACAAAATTATGAAGACTTTGCTCCAGGTAATTCCTTCATTCATGTTAATGACTTCCCTGATGCTCAAGCACTGGCTAATCGTCTGCTTCAGCTGGACAAAGATGACGAAGCTTACAAGCACTACTTTGATTGGAGAAAACATGTGACTGCGACTCCACATCTGGTCATTTGGAATCAAGAGTTTATCATATATATCTGTCACGCCTGTGAATATATTGGAAGGCACAAAGAGTATAAAGCTGCACATGACATCTACAAGTGGTGGTTTTCATAAAGAAGAACTTGAGCACTATCATTATCATTCCATCATTATAAACCTTTAGGACTGGGCTGAGATTTCTTTGTAAGTCGGTAATGATTCCTGAATGCTAGCTATAATAACATGCTATAAGTAATTCGTGAGAACTCATTATCATATTAGTGTCAATTAGATTCATTACAGTGCCACATGGTGTGCTATTAACAATTAGGAAAACATTATAAATGTCATACaacttatatataatattaaagtaattattttacatacgattttttttaaactaaaattattttaaacattactgTTTTAAACATATGTTCTTTTTACTTGATGAACTGAATGACGtcatttttataacttttttttttaattattgactATAACAGTTGCTTAATAATTATGCACAGGTCATTATGAGTTATAAATGTTGTAAAGTACACCACATGGCATGATAATGAATAGTTCAATCTTACGACTATAAAGAAATGACATATTAAATGGCATTATTCAGGAATTACGaccaacttaaaaaaaaattttggaagcACTATTATAATGATTTGTGACAAGCTTAATAGAAAATGTTACTGAACTTTTAATGTTGTCatcaattttaatgaaaatatttatatatttttttctcactttgaaaatatatgttttttggTACGGATAAACATGAAGATGCTGATGATACATGATTTCCATATGCGATTGTTCTCAGTAGTGCAATATAGAAATTAATGAATGACTTATGACTTATTGGTTTGTTTATACCATGTTAATGTGGCTAATCTGACATAAAAGCTGTAATGGTTCACTGCGAGCAAGAGAGCAAACAAGAAGGAACAGGAACATAATAATGAAGACAGTAGATTGAAGCATATCGCATAtcgggattttttttctgtgtgtactTTAATATCGAGTTTGATTGGTTGGGATTGGTACTTTCTTGTTCATTCTGGTTTTTCTGGGAATACTGTGCATGATTTGCAACTATAAAGAATTTGATGTTCACTGTGTGAA

Function

NR:

description
PREDICTED: alpha-(1,3)-fucosyltransferase 9-like isoform X1

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303155.1 True 2209 mRNA 0.38 3 31519040 31524900

Neighbor

gene id symbol gene type direction distance location
si:ch1073-126c3.2 NA coding downstream 493195 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 512578 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 763564 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 765362 30746232 ~ 30753678 (-)
fam204a fam204a coding downstream 799340 30705014 ~ 30719700 (-)
slc30a10 LOC108263333 coding upstream 88702 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 471609 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 606547 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 666950 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 790558 32315458 ~ 32331216 (-)
G55992 NA non-coding downstream 195576 31323154 ~ 31323464 (-)
trnag-gcc_4 NA non-coding downstream 658534 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 667033 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 895835 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 900853 30504336 ~ 30618187 (-)
G56173 NA non-coding upstream 108195 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 132151 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 203873 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 292353 31817253 ~ 31827134 (-)
G56315 NA non-coding upstream 320137 31845037 ~ 31846195 (-)
rsrp1 rsrp1 other downstream 1174502 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1265584 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1357816 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 1396218 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 1407879 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 21001 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 38655 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 153483 31678383 ~ 31830932 (-)
G56272 NA other upstream 302914 31827814 ~ 31829484 (-)
G56303 NA other upstream 312282 31837182 ~ 31838235 (-)

Expression


Co-expression Network