LOC117596917


Basic Information

Item Value
gene id LOC117596917
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 985548 ~ 988804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303165.1
TACCATCAACAGTACCGACAACATGGTCAAACTTCAGGATGAAGCAAAGACACAACAATTCAGTTCCAGTGCTTGGATTGGACTGTACACTAACATCAACAGCTGGCACTGGTCCTTCAAAAACGAGCCGCTGGGAGGTTTTACAGCCTGGAAAAGCACAGAGCCTAACAACCTGTTGCGAAATGAaggatgtgtttttatatgGCAGGAGACATGGTATGATGCACCATGTGACTATCCATTTAGCTTTGTGTGCTATGATGACAGGAAGACTGGCACTGACAGCTACATTTTAATCTCTGAGGCTAAGACGTGGTATGAAGCTCAGAGCTACTGCAGGCAGCAGCACACAGACCTGGCCAGCATGAGAAGCGCAACAGAAAACTCAGTTGTAGGAGGAATTATCTATGAGGGTTCGATTTGGATTGGCCTCACCAGAGACCCCTGGAAATGGTCAGACCAGACCACCAACGTGTCCGTCATTACATGGTCACGTGGAAACACTGATGATTACTTGATGAATAAAAGTTGTGGCTGCTTAAATGGTGGTGTGGCTGATGTAGCGCAGTGCTCAGACATCATGCCTTTCTTCTGTTACTTGTTCCCAAAACAACAGCAGATCATAAGAGTGAAGGTCAAGTCCAGTCAGGATGTGAATGATCCCGCAATaatggcggccatcttggagaAGCTCCAGCAGAAACTGAAGGATCATGGAATGGCTGAGAACATCACTGTGAAATGGAGAAAGCAACCAGATGGAGTGGTGTTTCACAAGGAGAAGGGAAATATTACTACAGTTGGGAATAACAATGGGGAGGCTTGTGACCTCTAAATCTTGAATAGTGTGTATTTTGTAGTGCATTAATCACTTTTAGCTTGAGGAccttgagtgtgtgtaatattttagcTTCCTTAAGTAGTACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303165.1 True 928 mRNA 0.45 4 985548 988804

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 282981 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 296045 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 296762 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 353018 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 521489 450594 ~ 464059 (+)
LOC113524625 LOC108263780 coding downstream 28590 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 49871 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 83933 1072737 ~ 1094921 (+)
hemgn NA coding downstream 173815 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 183081 1171885 ~ 1176844 (+)
G38566 NA non-coding upstream 9853 975350 ~ 975695 (+)
G38564 NA non-coding upstream 15198 970143 ~ 970350 (+)
G38563 NA non-coding upstream 25870 959420 ~ 959678 (+)
G38552 NA non-coding upstream 60010 922653 ~ 925538 (+)
G38548 NA non-coding upstream 78161 901934 ~ 907387 (+)
G38570 NA non-coding downstream 3437 992241 ~ 992600 (+)
G38571 NA non-coding downstream 4205 993009 ~ 993295 (+)
G38582 NA non-coding downstream 57439 1046243 ~ 1049429 (+)
G38585 NA non-coding downstream 79443 1068247 ~ 1069317 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 130490 1119294 ~ 1153326 (+)
mtap mtap,LOC108263789 other upstream 240549 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 771819 200601 ~ 213729 (+)
G38577 NA other downstream 75168 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 113974 1102778 ~ 1141934 (+)
trmo trmo other downstream 177041 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 205415 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 994843 1983647 ~ 1997265 (+)

Expression


Co-expression Network