si:dkey-33c12.4 (LOC108263338)


Basic Information

Item Value
gene id si:dkey-33c12.4
gene name LOC108263338
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19237356 ~ 19243873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303175.1
GTAGTGCGCATGCGCATGGCAAAGGTCCTGTGTTAAGGTGTGAGCTGGCAGGAAGAGATGTGAGCAGCGTGTTTATAATGCTAgagtgaagaaaaacaattgATTTATGaacacagtaataataatagctttAGTATAACActacatatatacaatataaaatgtctaaACATAATGGCTTCGGACCTGGTTACTTCCGTATGCTTGAGAACACACGACTGATGCAGACCCATGAGGCTGTGGTCGACTTAGTCAACGGAAGACCtacacattatgattttttaCTTAATGCATTGGGATACGGGTGTGGACTCGgTATAGATTACCTTGATTATGAGGATTTGACTGACGACGATGACGACGATGAAGGATATGGCAGGCAAAACAATAGATATTGTGGCTTTGCTCAAAACTTTCTAGATAAAGGGCTTTCCAAACAGCTGCCTGCAATAACACATTATAAACCAGTCAAGTGCGTCACACCCGAGGAGGCTGCAAAAAATGCTAAAGAACTTGTAGCTGAAGAGGAAAAACttaagaaaaaagcagaaaagaaaaaacagaagaaaatgAGGCAGCGAGAGAGACGTCGCCTAGAAAAATTAGAAAAGGAAAATGGGAATAAACATGATGCCAGACAGgttgatgatgatgatgatgctgttcCAGTTAAATCTAAGCCTACAGGAAGAGAgtgtgaaaataagaaaaaaacgaGTAACAGTGTACCTCCTGACCCTGGCCCACAGTACAACTCAGTAGCCACAGAGAGCAGTGACagttgtgatgatgatgaagatgatgataaaGAGAGCTTAGTCGATGAACTAGAGCTTGATATGAgcagctgctttgtgaccaaCGCCGCAGCCATCGCAAAACGCAAACTTGAGCAGAAACCTAAATCTGACAGGAAAGACAAAAAAGCTGAAAACTTCAAGAAGCATGACACAGCACAAAAAAGTACAGCAGAGCCCCAGATTAAGAATGTTAATGAAAAGGAGGCATCAGAGGAACCAGTAAAGGACAATGTTACAACGAGCAGAGAGCTGGGAGTGCTAGGTAATAAATATGCTCAAACAGGAAATTTGGATATGGCTGTGAAGTATTTTACTGAAGCTATAAAGCACAATCCTCAAGAAGTTAAGTTGTTTGGAAATCGCTCCTTCTGTTATGAGAAAATGCAACAATATGAGAAGGCTTTAATAGATGCTGATATTGCTCTTTCTCTGAACCCAACATGGATTAAAGGACTGTACAGAAAAGGGAAAGCATTAGTTGGGCTTAAGAGATACTATGAGGCTCGTTTGACCTATAAGGAAGTTTTAAAGCTTGACAGCTCCTGTACTGATGCTGCTCAAGAGCTAATGATGGTACAAATAATGCAGTTAATGGATATGGGATACACTAGAGAGCAAAGTTCAAATGCTCTGATCATACATGGAACAGTAGAAAAAGCTTTAGAAGCCCTCTCTGGTTTACATGGTAATATGGCAGCTGCACAAGTGCATGTAGAGGAAGTAAGAGTTTGTCCAGAGAGAAATCCTCAACTTGTGAAAGTCCCAATCAGAACAGTCCCCCAGAACCCACCTAAAGTCAGCACAGCTGTACCGGCTACACCAGAGCTGTTTCCAATCTGGGTTGGGGATCTAGTGCCTGCTATATCAGAATTAAAACTCCATGAGCTCTTCAGCAGATTTGGGCCAGTCCATAGTATAAAATTATTATCAGCAAGACGCTGTGCTTTTGTCAACTACACCAACAAAGATGACTGTGAGAAAGCCATCCAAGAAATGCATGGCTTTTGTATATCTGGGACTTGTCTTGTAGTTCGTTACCCTGACAGAATCCATACACATCTTGGTGTATCCAAAGCTGCAGCAACAGATGCTGgaaaagtaaaTAAGTTTCCTGATGAGTGCTTTTTCTGGAGGACGACAGGCTGTATCAAGAATAATCGGTGCTCCTACAGACATGTACCAGAACACAAGGGCATTGATCGGCCAAAATTTAAGTGATAGGAAGACATTCAAGTGAAAGAAGGCTAGCAGGAAGTTTGACATTAAtccaaatgttttatattacatttattaatgaccACTTTTACCTaaacaaataaccaaataaGTGGCAGTATATACAAAGTTATAATCACTGTAACAGAAAATTAACTGGCTGAAATCAAGTTGTTCATTGTAGTTAAAATTTACTTTTATGTAAAATTTACTTTTATGTCTAAAACCAGAAAGTATTGGGACTTGGTTGATCCTGAGGAGAAAGTTTTATCTGTTTTCCCAGCACAtctaaaagtattttatttacttgatTAGTAGAACCTGCAGGAGGCTCATTACTACTCTTATTGAcaatagcctttttttttttttaaagtgtaataaacattacaaagtG
>XM_034303176.1
CGGCACATGAAACACAGACTCTGGGTTTTTCCTAAACTTGAGCTAGCTAGGTCCCTAACGCTAGCGCGCTAAGTGCGTAGGCAGGATGAGATAGCAGCACTACAGCCACTACAGCCATACTGCATAGCTTTTGAAAGAATTCAGAATTAACACTGAAGTAGAATAGGGGTGTTAttatgttggtgtgtttttttttctgtaaagtgCAATTAAGAACATTTTCTAGCTAGCTCGTAGTTCAGTTTTCTCTAGCCGACACATTTGTCGAGATTAGCTCGTTGGCTACACAGCACAAAGTCGCGCGCAGTTCCAGTCAACAGGTTACTTCCGTATGCTTGAGAACACACGACTGATGCAGACCCATGAGGCTGTGGTCGACTTAGTCAACGGAAGACCtacacattatgattttttaCTTAATGCATTGGGATACGGGTGTGGACTCGgTATAGATTACCTTGATTATGAGGATTTGACTGACGACGATGACGACGATGAAGGATATGGCAGGCAAAACAATAGATATTGTGGCTTTGCTCAAAACTTTCTAGATAAAGGGCTTTCCAAACAGCTGCCTGCAATAACACATTATAAACCAGTCAAGTGCGTCACACCCGAGGAGGCTGCAAAAAATGCTAAAGAACTTGTAGCTGAAGAGGAAAAACttaagaaaaaagcagaaaagaaaaaacagaagaaaatgAGGCAGCGAGAGAGACGTCGCCTAGAAAAATTAGAAAAGGAAAATGGGAATAAACATGATGCCAGACAGgttgatgatgatgatgatgctgttcCAGTTAAATCTAAGCCTACAGGAAGAGAgtgtgaaaataagaaaaaaacgaGTAACAGTGTACCTCCTGACCCTGGCCCACAGTACAACTCAGTAGCCACAGAGAGCAGTGACagttgtgatgatgatgaagatgatgataaaGAGAGCTTAGTCGATGAACTAGAGCTTGATATGAgcagctgctttgtgaccaaCGCCGCAGCCATCGCAAAACGCAAACTTGAGCAGAAACCTAAATCTGACAGGAAAGACAAAAAAGCTGAAAACTTCAAGAAGCATGACACAGCACAAAAAAGTACAGCAGAGCCCCAGATTAAGAATGTTAATGAAAAGGAGGCATCAGAGGAACCAGTAAAGGACAATGTTACAACGAGCAGAGAGCTGGGAGTGCTAGGTAATAAATATGCTCAAACAGGAAATTTGGATATGGCTGTGAAGTATTTTACTGAAGCTATAAAGCACAATCCTCAAGAAGTTAAGTTGTTTGGAAATCGCTCCTTCTGTTATGAGAAAATGCAACAATATGAGAAGGCTTTAATAGATGCTGATATTGCTCTTTCTCTGAACCCAACATGGATTAAAGGACTGTACAGAAAAGGGAAAGCATTAGTTGGGCTTAAGAGATACTATGAGGCTCGTTTGACCTATAAGGAAGTTTTAAAGCTTGACAGCTCCTGTACTGATGCTGCTCAAGAGCTAATGATGGTACAAATAATGCAGTTAATGGATATGGGATACACTAGAGAGCAAAGTTCAAATGCTCTGATCATACATGGAACAGTAGAAAAAGCTTTAGAAGCCCTCTCTGGTTTACATGGTAATATGGCAGCTGCACAAGTGCATGTAGAGGAAGTAAGAGTTTGTCCAGAGAGAAATCCTCAACTTGTGAAAGTCCCAATCAGAACAGTCCCCCAGAACCCACCTAAAGTCAGCACAGCTGTACCGGCTACACCAGAGCTGTTTCCAATCTGGGTTGGGGATCTAGTGCCTGCTATATCAGAATTAAAACTCCATGAGCTCTTCAGCAGATTTGGGCCAGTCCATAGTATAAAATTATTATCAGCAAGACGCTGTGCTTTTGTCAACTACACCAACAAAGATGACTGTGAGAAAGCCATCCAAGAAATGCATGGCTTTTGTATATCTGGGACTTGTCTTGTAGTTCGTTACCCTGACAGAATCCATACACATCTTGGTGTATCCAAAGCTGCAGCAACAGATGCTGgaaaagtaaaTAAGTTTCCTGATGAGTGCTTTTTCTGGAGGACGACAGGCTGTATCAAGAATAATCGGTGCTCCTACAGACATGTACCAGAACACAAGGGCATTGATCGGCCAAAATTTAAGTGATAGGAAGACATTCAAGTGAAAGAAGGCTAGCAGGAAGTTTGACATTAAtccaaatgttttatattacatttattaatgaccACTTTTACCTaaacaaataaccaaataaGTGGCAGTATATACAAAGTTATAATCACTGTAACAGAAAATTAACTGGCTGAAATCAAGTTGTTCATTGTAGTTAAAATTTACTTTTATGTAAAATTTACTTTTATGTCTAAAACCAGAAAGTATTGGGACTTGGTTGATCCTGAGGAGAAAGTTTTATCTGTTTTCCCAGCACAtctaaaagtattttatttacttgatTAGTAGAACCTGCAGGAGGCTCATTACTACTCTTATTGAcaatagcctttttttttttttaaagtgtaataaacattacaaagtG

Function

NR:

description
PREDICTED: hsp70-Hsp90 organizing protein 2-like isoform X1

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303175.1 False 2412 mRNA 0.39 18 19237356 19243873
XM_034303176.1 True 2543 mRNA 0.40 18 19237568 19243873

Neighbor

gene id symbol gene type direction distance location
cpxm1a cpxm1 coding upstream 36223 19190273 ~ 19201133 (+)
pdzd7a pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 172333 19046016 ~ 19065023 (+)
zgc:154058 zgc:154058,LOC108263524,LOC108441772,LOC102793226,LOC103041715,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC106613076 coding upstream 226709 18983106 ~ 19010647 (+)
ftr14l LOC108263523,LOC108441770 coding upstream 256040 18977234 ~ 18981316 (+)
LOC117596455 LOC108262933,LOC105007542 coding upstream 260755 18973637 ~ 18976601 (+)
si:dkey-33c12.3 LOC108263340 coding downstream 3145 19247018 ~ 19250422 (+)
mrps26 mrps26,LOC107678578 coding downstream 8977 19252850 ~ 19254354 (+)
rab11fip5a rab11fip5,LOC108263817 coding downstream 74952 19318825 ~ 19339637 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding downstream 159059 19402932 ~ 19410091 (+)
ap5s1 ap5s1 coding downstream 168798 19412671 ~ 19426321 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 33669 19202230 ~ 19203687 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 221782 19014191 ~ 19015574 (+)
G48911 LOC108263518,LOC108262933 non-coding upstream 262646 18970798 ~ 18974710 (+)
G48908 NA non-coding upstream 269579 18967406 ~ 18967777 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 526061 18708032 ~ 18711295 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 22672 19266545 ~ 19267589 (+)
G49157 NA non-coding downstream 51209 19295082 ~ 19295293 (+)
G49214 NA non-coding downstream 156778 19400651 ~ 19400883 (+)
G49316 NA non-coding downstream 370844 19614717 ~ 19617317 (+)
G49522 NA non-coding downstream 668948 19912821 ~ 19954595 (+)
grxcr1b LOC108263619 other upstream 20080 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 200712 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 325161 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 1015306 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 2260327 16973682 ~ 16977029 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 12191 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 97477 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1138473 20382346 ~ 20392601 (+)
G49862 NA other downstream 1331100 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1781860 21025733 ~ 21118964 (+)

Expression


Co-expression Network