LOC117596921


Basic Information

Item Value
gene id LOC117596921
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4284375 ~ 4289439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303191.1
AATGTACGCGCATGCGCATTGCGAATCGGGACGTGGATTGGACACTTCCATACCGGATCTCCGCGAGTTGAAACTCCACCTGAAGTTTGTCAGGAAGTGTATTCAGGGACAGAGTAACCTGTAGACTGCAAGTATTCATGAAGACGCGCAGTAAAGACCGATCAAGCTGCAATATGCACAAGGACAACTCTTCTAAAGGCGCTCATTCAGAGAGTACAAACACGCTTCAAAGTGTCGAAccgcaacaacaacaacaacaaAGTGAAACGTCATCTCCTGGTTCTCTTCATGCTAAAATCAGTGGGATTCCTGCAGAAATTCCAGGCAAGAAGAGAATTCACTTCTGCACAGAGTGTGGGAAAGGTTTTGCTCAACACTGTTATCTTAAACGACATCGGGTCGTtcatacaggagagaagccatataTCTGCTCTCAGTGCGGGATGAGTTTTTCACATCCCAGTACTCTAATAAGCCACcggcgcattcacacaggagggAAGCTGCATTACTGCCCGGAGTGCGGGAAGAGTTTTACACGAAACTATCATCTTAGACGACATCAGTTCATTCACACGGGAGAGAAACCATattactgctcacagtgtgggatcAGTTTTACACACCAGAGTACTTTAAAGGAGCACAAGTACactcacacaggagagaagccgtattcCTGTTTACAGTGTGGGAGGAGTTTTTCACACCAGAGTACACTAAAaaaacaccagcgcattcacactggGGTGAAACCGTATTACTGCTCAGACTGTGGGAGGAGTTTTAATCGAAATagtcatcttaaaagtcatcagCGCAttcatgaaagagaaaaattgTATCACTGCTCATAGTGTAGCTACACACAGAGAAGAAACCATGTATGTTTTAACTGATTATTCCTGGTCGTAACGTTTTTATCTATAGTGCTGCTCACAGTGCTGGAAAAATTTTACAGAACAAAGTGATTCAAGAACAAAGAGAACACAGGCATTATACTCGCAGTCTCCAATGATTGCACAAGATACACAAGACAGTTGAATTAGTGACATTAATTTGATTAGCTACAGTAGTCGTACTGTTTGTACtgacagttttaaataataccTGTAATTACCTGTAGTTATATaaaaggtttatttaaaaaaaaaaatatttttgcattttaagtCATTCATCTTTGCCAATGAAACCTCAAACTCTGCTGTTTAAGTAACTGTACACGTTTGAAGAGAATAAACTGGTGACAGTGGGGACATAAGCAAGTCTGGTTTGTACACCTGCCCACACTACTATTTGATGCTATAAATttatctataatatataataaatgctTTCTAAAAATATCAA
>XM_034303192.1
AAATGTACGCGCATGCGCATTGCGAATCGGGACGTGGATTGGACACTTCCATACCGGATCTCCGCGAGTTGAAACTCCACCTGAAGTTTGTCAGGAAGTGTATTCAGGGACAGAGTAACCTGTAGACTGCAAGTATTCATGAAGACGCGCAGTAAAGACCGATCAAGCTGCAATATGCACAAGGACAACTCTTCTAAAGGCGCTCATTCAGAGAGTACAAACACGCTTCAAAGTGTCGAAccgcaacaacaacaaAGTGAAACGTCATCTCCTGGTTCTCTTCATGCTAAAATCAGTGGGATTCCTGCAGAAATTCCAGGCAAGAAGAGAATTCACTTCTGCACAGAGTGTGGGAAAGGTTTTGCTCAACACTGTTATCTTAAACGACATCGGGTCGTtcatacaggagagaagccatataTCTGCTCTCAGTGCGGGATGAGTTTTTCACATCCCAGTACTCTAATAAGCCACcggcgcattcacacaggagggAAGCTGCATTACTGCCCGGAGTGCGGGAAGAGTTTTACACGAAACTATCATCTTAGACGACATCAGTTCATTCACACGGGAGAGAAACCATattactgctcacagtgtgggatcAGTTTTACACACCAGAGTACTTTAAAGGAGCACAAGTACactcacacaggagagaagccgtattcCTGTTTACAGTGTGGGAGGAGTTTTTCACACCAGAGTACACTAAAaaaacaccagcgcattcacactggGGTGAAACCGTATTACTGCTCAGACTGTGGGAGGAGTTTTAATCGAAATagtcatcttaaaagtcatcagCGCAttcatgaaagagaaaaattgTATCACTGCTCATAGTGTAGCTACACACAGAGAAGAAACCATGTATGTTTTAACTGATTATTCCTGGTCGTAACGTTTTTATCTATAGTGCTGCTCACAGTGCTGGAAAAATTTTACAGAACAAAGTGATTCAAGAACAAAGAGAACACAGGCATTATACTCGCAGTCTCCAATGATTGCACAAGATACACAAGACAGTTGAATTAGTGACATTAATTTGATTAGCTACAGTAGTCGTACTGTTTGTACtgacagttttaaataataccTGTAATTACCTGTAGTTATATaaaaggtttatttaaaaaaaaaaatatttttgcattttaagtCATTCATCTTTGCCAATGAAACCTCAAACTCTGCTGTTTAAGTAACTGTACACGTTTGAAGAGAATAAACTGGTGACAGTGGGGACATAAGCAAGTCTGGTTTGTACACCTGCCCACACTACTATTTGATGCTATAAATttatctataatatataataaatgctTTCTAAAAATATCAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303191.1 True 1353 mRNA 0.41 2 4284375 4289438
XM_034303192.1 False 1348 mRNA 0.41 2 4284375 4289439

Neighbor

gene id symbol gene type direction distance location
LOC113542293 NA coding downstream 10208 4259731 ~ 4274167 (-)
LOC113542265 NA coding downstream 35552 4229822 ~ 4248823 (-)
galntl6 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 194857 3877190 ~ 4089518 (-)
galnt7 galnt7 coding downstream 414611 3843479 ~ 3869764 (-)
cep44 cep44 coding downstream 584855 3683443 ~ 3699520 (-)
LOC113542300 NA coding upstream 4057 4293496 ~ 4296129 (-)
sparcl1 LOC108262882 coding upstream 174257 4463696 ~ 4473298 (-)
fam193a fam193a,LOC103156485 coding upstream 222262 4511701 ~ 4540623 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 496334 4785773 ~ 4878809 (-)
ednraa ednra coding upstream 632349 4921788 ~ 4944595 (-)
G40522 NA non-coding downstream 443215 3792229 ~ 3841160 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding downstream 443433 3838818 ~ 3840942 (-)
LOC113545372 NA non-coding downstream 446193 3819051 ~ 3838182 (-)
G40323 NA non-coding downstream 571542 3702221 ~ 3712833 (-)
G40316 NA non-coding downstream 610564 3673150 ~ 3673811 (-)
LOC117596430 NA non-coding upstream 199107 4488546 ~ 4496696 (-)
G40770 NA non-coding upstream 248620 4538059 ~ 4539526 (-)
G40936 NA non-coding upstream 376083 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 377767 4667206 ~ 4668993 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 449945 4739384 ~ 4739711 (-)
trnah-gug_3 NA other downstream 1249822 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1250438 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1251572 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1300172 2220147 ~ 2984203 (-)
G39720 NA other downstream 2110624 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 255700 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 604463 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 914267 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1466578 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2872035 7161474 ~ 7204699 (-)

Expression


Co-expression Network