LOC113537651


Basic Information

Item Value
gene id LOC113537651
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20349410 ~ 20351476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403784.2
CAAGGAATAGACCTCTTCTCTATGAGTCCCTGTGTTCATTTGAATCTCTTCTATGTCTCCCTATGTTTTCTCCAGTGTTTCTCTTCCAGGACATTCTGGTATATCCTGACAgtaggaaacaggagaaccaggaggaaatcCATACAAGCACATGGAGAATATGCATAGAAACTCCACTctgacagtaacctgagctcaggatcaaactggggaccctggagctgtgaggcagcaacactctCCACAAAACAGGACACTGTTTCCATTCTCAGGCTGCAAACTAGAGACCTCAGTGTGACCAGAGGGGATGGCTGAAGAGCACTTACCATGAAGGCTCTGTCCTATGCTCTTTGGCATAATGAGACTTGACATGTGCTGTGCAGTGTGAACACTATCTGAAGAGAATGTGTGAGGCTAGGggtatgtgtgatgtgttgcAGGTGCCAGGGTTTAACAACCATTTGAAAACAATGAcgctatatactgtatgagtCCTTCTGAtcttggccttttttttttttaaatagaaaagattaaaaaaatatgaaataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403784.2 True 553 lncRNA 0.43 3 20349410 20351476

Neighbor

gene id symbol gene type direction distance location
gabra2a gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424 coding downstream 5908 20327905 ~ 20343502 (-)
gabrg1 gabrg1,si:dkey-155h10.3,LOC107747559,LOC107667066,LOC107666522,LOC107585224,LOC107569420,LOC107733747 coding downstream 32241 20309844 ~ 20317169 (-)
gabrb1 gabrb1,LOC107666521,LOC107747557,LOC107733746,LOC107585222,LOC107667065 coding downstream 70368 20262035 ~ 20279042 (-)
dapp1 dapp1,LOC107667071,LOC107747563,LOC107666557,LOC107585227 coding downstream 125729 20217216 ~ 20223681 (-)
rrh rrh coding downstream 140118 20205863 ~ 20209292 (-)
trim8a LOC108263671 coding upstream 76395 20427871 ~ 20442232 (-)
sufu sufu,LOC107666454 coding upstream 93944 20445420 ~ 20461102 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107585270 coding upstream 203017 20554493 ~ 20573783 (-)
zbtb18 zbtb18 coding upstream 268456 20619932 ~ 20629167 (-)
sdccag8 sdccag8,LOC108263444 coding upstream 398196 20749672 ~ 20802069 (-)
G49700 NA non-coding downstream 132980 20215653 ~ 20216430 (-)
G49661 NA non-coding downstream 165121 20181078 ~ 20184289 (-)
G49605 NA non-coding downstream 284899 20064256 ~ 20064511 (-)
G49606 NA non-coding downstream 323746 20020687 ~ 20025664 (-)
G49584 LOC108263592 non-coding downstream 379116 19895698 ~ 19970294 (-)
G49806 NA non-coding upstream 112417 20463893 ~ 20464950 (-)
G49836 zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523 non-coding upstream 121001 20472477 ~ 20473295 (-)
G49841 LOC108263473 non-coding upstream 126232 20477708 ~ 20478688 (-)
G49941 NA non-coding upstream 148057 20499533 ~ 20500791 (-)
G49942 manba non-coding upstream 149320 20500796 ~ 20502665 (-)
atp10d atp10d,LOC107556926 other downstream 92890 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 143817 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 581276 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 681749 19614717 ~ 19667661 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other downstream 1029677 19316487 ~ 19319733 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other upstream 6458 20357934 ~ 20369445 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 1036267 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1260187 21611663 ~ 21645512 (-)
G50837 NA other upstream 1598379 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 1683809 22035285 ~ 22123649 (-)

Expression


Co-expression Network