LOC113539667


Basic Information

Item Value
gene id LOC113539667
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23215848 ~ 23218757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403951.2
TCCAAAGAGCAGCTGTCATCGGGCTGTGCCTAGAAACATTTCACAAAGCAGCACTGAGAGTTTGCACACCGGAGAGAGGCGAACTCTAGCAAGAGCAAAATAAGGGCCAGTCGCTTCAGTTTTACAGACACCAAATTATGATTCATCTCCAAACCTCTCGACAAAGTGACAGAgtgcgtcccaaaccgcacactAAATAGTAAGTGAAAAGAGTAATCCAGGGAAGGTTTTGGACGCAGCCGCAGAGTCAGCgacgttctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtacacggcATTCGGGTAAGAAATGAGGATTCCTGTGACCGCTAAACTGAACGACACTCAATAGATTACATCAGTTCGGGACGCGGCTGCGTGTGTTTTCACATGGTGGGCTATCTGCGCTCAGCTCGGACGTGTATCCCGGCTTAAAGATGACATCTTAGCCAAACGCTTAACTGCCGTCACACCACGCCAACAGCATTATAAAGTCATTAGGTTGCCTCAATTAGCGGCTATAAAAGGAGCACAACGTGGGCAAGGACTTTCGCTTTAACTTTTCTTTAACTGAGGCTCAGCGCTGTGTGACGCGCATCAGTGAGTAAATACCGTCATTTAAGTCCATTTGTTTACGAGGAGCTTTTACACTGAAGGTGCAGAAACTTTGGGAATACGGGCTTGGAAGCCATTCATAGGTAAACTGAGTGCAATACAAGTAGGCTAAgggtgtttttgttgttgtgttttttttttttgttgttgttgttgtttttttttttatgacataCTAAATTTGCACGTGTAGATTCCAAACTCGGATACACTTTTGTTATTGCTATACAGGCAAACCTTTGTtacactgataaataaaatgctaataaaaattaaaatagtttaaaatagTCACGGGGAAATTTCTTTCAAATGTGCtgaaacattaatataatctgTAAGGCGCGTTCATTGAGGGAAATTTAAATGTCTTGAAATTTTGCACAAGTTTAATATGGaacctttttaaatttatttatttatttatttattttgccaactgacattttgacatttttggaaAGTAATTACAGTCGTCAAGCTTCCCCGTTATTCAGCGTGTTCTTCCCCGTGTGCTCCTCGCATAAGCGCGTGGGAAAGTGTCGGTGCTGGAGAGCAGGGGAGCTGCGCGGTACTGAGCAGGTGTGAGGTGGCTGTTTTCCGCCTGGCCAGGAAATGACTGGGACACACTGCATCTGTTTGTACATCAGCATCCGAACTGTACAAATATTCAGCTAATTCAGACAGCACACTTTTACTTcacattcaaaaacactgaaatctgTGAATTAATAGCTGCGTTGAGGTAAAAGAGTAAGACtaacattaaattattacatcCTAGAACATTAAATTGggaattcatattttatataaattgtcATATGTAAATCGGCGTAATATATACACTAAAAGTAGGTTATGTACCTAATGAAACTAGCAGCCTAGTAATATCAGATACTTTAAAACAAAACCTCCTGTAGGGAAAGTAAGAGCAGCTGAAAGTCGGATCATGTTTGAGAACTAAACGCAAGCTAGAACACAAAGCTATGAAGTGattaaaccattaaaacagACATTACAACCACTGGCAGTTTGGCCAGATTATTTAATGATGGTGGATTATAGATGATGAAATAACTACGCGGAAGAAAGAAAACTAGTCTATTTGAttggttactttttttttttttttttggcaaagaaTTTCATAAAAgaacattataaatgtattagtGGCGAAAACTGTAATGAgctgaaatttaaattttaagagATCACTTAATCAAAATATCCCAAAAAGCCTGAGCGCTGTTAGACTTGCAGTAGAAAGTAAACAAGGTCCTGAAGACAAACTGTTGCTGTGGAGCTTCAGCTGGATCATGCGCGCCTCCTACCGGCTGCACCGGGAATGGCCTTTTCAATAAAACACGGACAAGCTCTGAAAAGATCATTTGCAGGCATGTGTGTAGTTACAACTCGAACAATTGTGAAATTAAATACTGTGCAGTCTAGCTGAGGCatgaaagtaagaaaaaaaaacaacaacgaaTTATCCCTTTATGTACACTATAatccatttctttttcaaacGTTGCGTAAAGCATGGGAAATTAAGATGAGTCTGCTCTTGACCTGTTCACCGtgtattaaattacaaattcctaataataatattttattcgggcaaatgacattttcatttatgtgtgtttatttttacagcGTAATTAAACGCTGCGTTCTAATATCTAATAAATCATAAGCTCGACTGGGGCTGgaaaaattagttttaaatatgatgtttttacaTGTGAAAATCTCTCTCAGACTGAAACATAAGCATGGACCTTCATACTGAACCCTGCTATGAGATTCGCGTAAAATGAGATGAAAAACAAAGCTTGCTCAaacgttgttttgtttgcttctGTGTAGTTTTATAAGTATTGTCTTTGGCTATGCTGAAACAGGGCTTAATTATTCGCACCAGAAGAGCTGTAGACACAAAAGACTTTCTGCTCTTGACAAGAAACGTGTGGAATGAAGTAATTATATAGATAAACTGTAACTACACAAATATCTTCCTCATAATAGTGTTGTAAGTGTAGCTAATTACATtacacgcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403951.2 True 2721 lncRNA 0.38 2 23215848 23218757

Neighbor

gene id symbol gene type direction distance location
phf10 phf10,LOC106589650 coding downstream 166724 23032198 ~ 23049124 (-)
fam120b fam120b coding downstream 238205 22964720 ~ 22977643 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding downstream 280987 22927645 ~ 22934861 (-)
apmap apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784 coding downstream 292108 22913819 ~ 22923740 (-)
LOC113540882 cul9 coding downstream 349405 22826230 ~ 22866443 (-)
c1d c1d coding upstream 453662 23672419 ~ 23679981 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding upstream 508395 23727152 ~ 23750761 (-)
mgme1 mgme1 coding upstream 619182 23837939 ~ 23840860 (-)
mrpl14 mrpl14,LOC102799944 coding upstream 643962 23862719 ~ 23867530 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 971661 24190418 ~ 24316428 (-)
G51462 NA non-coding downstream 145127 23070343 ~ 23070721 (-)
G51390 NA non-coding downstream 325341 22890297 ~ 22890507 (-)
G51389 NA non-coding downstream 325574 22890059 ~ 22890274 (-)
G51289 mea1 non-coding downstream 472576 22647350 ~ 22743272 (-)
G51276 NA non-coding downstream 607811 22605547 ~ 22608037 (-)
G51523 NA non-coding upstream 41439 23260196 ~ 23266336 (-)
G51557 NA non-coding upstream 194923 23413680 ~ 23413941 (-)
G51577 NA non-coding upstream 238743 23457500 ~ 23457991 (-)
G51579 NA non-coding upstream 248189 23466946 ~ 23470699 (-)
G51580 NA non-coding upstream 252910 23471667 ~ 23472219 (-)
znf318 znf318 other downstream 427044 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 643980 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1092199 22035285 ~ 22123649 (-)
G50837 NA other downstream 1265659 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 1570336 21611663 ~ 21645512 (-)
G51576 NA other upstream 229151 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 798139 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 889594 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1233229 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 1443228 24661985 ~ 24735888 (-)

Expression


Co-expression Network