LOC113542069


Basic Information

Item Value
gene id LOC113542069
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29269096 ~ 29270020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404254.2
CAATTGTTAACCCTTCCTAGTGACAGGGATGGCGGATTTTTTGACTATATCTCATCCTTACTTTGATGTGTCTGACAGAGCGAGAACACAATTCCATCTACATACCCCATCAGtgcttctccatcagtaagaggttgtggggagcctggagcctatcgcAGGAGACTTGGGGCATAAAGCAGGGGACAcactggatggggtgccaacccatcccagggcacaatcacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404254.2 True 243 lncRNA 0.50 3 29269096 29270020

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_11 NA coding downstream 67093 29201932 ~ 29202003 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562 coding downstream 649071 28610623 ~ 28620025 (-)
ephx5 ephx1,LOC108426104 coding downstream 748267 28515778 ~ 28520829 (-)
LOC113542138 NA coding downstream 763819 28504100 ~ 28505277 (-)
LOC113541930 NA coding downstream 767698 28499606 ~ 28501398 (-)
LOC113541985 NA coding upstream 412525 29682545 ~ 29684864 (-)
zfyve21 zfyve21,LOC106610961 coding upstream 416710 29686730 ~ 29695063 (-)
dact2 dact2 coding upstream 503365 29773385 ~ 29779069 (-)
eif3s6ip eif3l,eif3s6ip,LOC106576896,LOC107676390,LOC107679167 coding upstream 512243 29782263 ~ 29788784 (-)
LOC113542130 NA coding upstream 870926 30140946 ~ 30148924 (-)
G54855 NA non-coding downstream 5667 29262760 ~ 29263429 (-)
G54775 NA non-coding downstream 133427 29133880 ~ 29135669 (-)
LOC117596831 NA non-coding downstream 187130 29077310 ~ 29081966 (-)
LOC117596864 NA non-coding downstream 260293 29003280 ~ 29008803 (-)
G54327 NA non-coding downstream 771208 28496771 ~ 28497888 (-)
LOC113542002 NA non-coding upstream 360981 29631001 ~ 29639350 (-)
LOC113541988 NA non-coding upstream 409391 29679411 ~ 29681726 (-)
G54976 NA non-coding upstream 410103 29680123 ~ 29683525 (-)
G54977 NA non-coding upstream 435723 29705743 ~ 29709036 (-)
LOC113542120 NA non-coding upstream 603028 29873048 ~ 29876760 (-)
G54269 NA other downstream 833685 28433220 ~ 28435411 (-)
zgc:163080 tmem14a other downstream 1727765 27537769 ~ 27541331 (-)
dst dst other downstream 2073141 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 3358977 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 4533208 24661985 ~ 24735888 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 609275 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 841811 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 882888 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 928305 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1070379 30340399 ~ 30344538 (-)

Expression


Co-expression Network