LOC113542110


Basic Information

Item Value
gene id LOC113542110
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26738543 ~ 26741519 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404260.2
AAGAACATATTTCACCATCCGAAAAATTCCTTCAGTGTGACTGCATGATATAAATATCATAAAGCTGCACTCTCACTGATTTGCATTTTATGCTCTTTTttgctttactttattttactttgatcatatgtctgtctgttctgtccATTTGAACCACtagtcttctttttctcagccttcgGATGGGAAACAACGTCCTGCAAGCTGTTTTTGTGAGAGGAAGTGACCCAGAGCGTGGTGAGAACTCACTCAGATCAGCGTACTACCTCAAGCAGAGCAGCCATGTTCCTCAGCAGTTCCACtgctttctttttattcttcattaCTCTCTCTACATTTCCATCTACACCTAAAAGCAGCGAGAATATCATAGTGCAAGTGACATATTCAAGGCATCCAGTAAGGGGAACAGAGGGACAGCCACTGACTCTCAAGTGCTCAGCACAGTATGACGAACAGCAATGTAGAAACATCTCGGTCTACTGGTGTCTTTTGGTGTTAGAAAAGTCATGTCAGCCACTTACTGATCCGGACAGATACTCGATCCATATCAACGAGACTCAAATCAGCGGGGAAAGTGTGTTCAGGCAAAGAGATGcttttgttacatttacacGGCTGACTCTCAATGACACCGGCTTTTATCAGTGTAAAGCCGTATGTCAGCACACTGAGACCACAGCTATGGGACATCTCATCAATGTCACTGTGACAGGTCAGGAGGAGACAACAAACATCTTCTTCACAGGCGACACTAATAATGGTCAGAAGATCCGGAGCGACCGATGCAGTGTGGTGTTTCTTCTGACAATCAGCAGCGTCTTCCTCCTTTTATGGAGCCATCAAATGTGATTATTTCATCTTCGTGGAAcaccaaatgctGATGACATCAGGCTTGAAAGAGGAGTGGAGGACAGAATGAGGCCAGCTGTCAAGCAAGATATATACTTAAATTTTCATTCTGAGATCTTTGCTGATTAACAGTTTTACCAGCTCCAGACTTCAAAGACATGATATGTGATTTTTAAAGAGTTTCATTCTGTCATGAGTGAACAAAGTTATACAATGTTGGAAATCActcatatttaaaagaaataccAGTTACTTTGACCTACTTTATATTACTAACGAAAGAACAGCTAAGCTCTTGTGGTCAGCTATGTTTATGTATTGGAAATGCCTTATACCGTGTATTTTTAGTCCTCtctatttttaaacttttcttaGAATTAAGGACAGGTGAAAATTTAGAAATGACTTCATACATTATAGGAAATGGTTACATTTCAAGCACAATGCCATGCTCATAACCTCTTATGGcttataaaagtaaaaagacaTCACTGGCCAGATGCTGCTGTttcacaatgacaataaaaggagaaaaggaaaaa

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404260.2 True 1394 lncRNA 0.40 4 26738543 26741519

Neighbor

gene id symbol gene type direction distance location
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding downstream 13105 26720819 ~ 26725438 (-)
gclc gclc,LOC107664701,LOC107712340 coding downstream 18953 26708519 ~ 26719590 (-)
elovl5 elovl5 coding downstream 31788 26687125 ~ 26706755 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding downstream 70525 26639549 ~ 26668018 (-)
lhb LOC100304481,LOC108425477 coding downstream 108665 26629250 ~ 26629878 (-)
bmp5 bmp5,LOC107712332 coding upstream 217585 26959104 ~ 26969207 (-)
col21a1 col21a1,LOC108263596,LOC107681042,LOC107565055 coding upstream 234206 26975725 ~ 27025890 (-)
zmp:0000000760 LOC108262759 coding upstream 292405 27033924 ~ 27055678 (-)
rab23 rab23 coding upstream 471581 27213100 ~ 27223218 (-)
ifngr1l NA coding upstream 487495 27229014 ~ 27246364 (-)
G53216 NA non-coding downstream 17883 26720076 ~ 26720660 (-)
G53204 NA non-coding downstream 30146 26707702 ~ 26708397 (-)
G53210 NA non-coding downstream 69722 26668613 ~ 26668821 (-)
G53183 NA non-coding downstream 191034 26547296 ~ 26547509 (-)
G53182 NA non-coding downstream 195321 26542964 ~ 26543222 (-)
G53250 NA non-coding upstream 57160 26798679 ~ 26799608 (-)
G53761 NA non-coding upstream 126139 26867658 ~ 26867877 (-)
G53809 NA non-coding upstream 285296 27026815 ~ 27027038 (-)
LOC117596899 NA non-coding upstream 455840 27197359 ~ 27201898 (-)
G53732 NA non-coding upstream 484826 27226345 ~ 27253952 (-)
LOC113542183 NA other downstream 828424 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2002655 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2086696 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2606060 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2698443 24016896 ~ 24040100 (-)
dst dst other upstream 316378 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 796250 27537769 ~ 27541331 (-)
G54269 NA other upstream 1691701 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3137776 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3370312 30111831 ~ 30122822 (-)

Expression


Co-expression Network