LOC113542125


Basic Information

Item Value
gene id LOC113542125
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30504336 ~ 30618187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404263.2
AGCAATAATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGtaTATCTCTCTCTTGGCCTGAATCACCAATTGTTCCAGTATAAAGGGAGAAAATGGTTTTACAATGTTTTCTACCTGCATCACAAGGGGATTGAGCCTCTGCACTACTGAATGACACAGCAAGCACTTTGACGTGTATTTTTCTATGAAGTCCCAACAGACACCGACCAGATCAGAGAACGGCAGCAGAAGAGCGTCTCACAGCAGGAGCAGTCCGTGAAAGGCAGGAGAGAAATGAGAGGCCGTGGTTCCTCTTCTTCAAAACATATTAGTGGAGGCCCAAGGATGAGAAGACCCTCTACTATCCTGGCCTCCATGTCCTCGACTCTTCGTCAGGAGGTcgcacttcatttttttttctcccccaccTCATCTAAAACATTTGTATTCTTCAGTTCTCCCTGAGcacaacttttatttttccctctgACTAGTTTAAAAATGGGAGAGGAGGGTTACTTGGTTGTAAAAGAAGCGATTACGGAGCCTCCGTCTTTAGCCTAATTGGATCAAGCTGACTCACAGAGCGTTGAACAAGATGTCGCTTGTCTCACTGCTGATAGACAAACAATTGAATTTGGTTCATAATTAAGTGCGATGCTAATTATTATATTTGAGAATATGTGAAATGAGGAAGTAACTGCATTTTTACTTCAggaaaaattattgttattaaatatttaaacgtAAATGTTATTACAGGATGacctaaaattaaaaattgtcttGAAGCATTGTGCACTATGCAAGTTTAGTGCACTATACTAAGTTTTGttctaacatttaattttgtac
>XR_003404264.2
ATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGGAGCAGTCCGTGAAAGGCAGGAGAGAAATGAGAGGCCGTGGTTCCTCTTCTTCAAAACATATTAGTGGAGGCCCAAGGATGAGAAGACCCTCTACTATCCTGGCCTCCATGTCCTCGACTCTTCGTCAGGAGGTcgcacttcatttttttttctcccccaccTCATCTAAAACATTTGTATTCTTCAGTTCTCCCTGAGcacaacttttatttttccctctgACTAGTTTAAAAATGGGAGAGGAGGGTTACTTGGTTGTAAAAGAAGCGATTACGGAGCCTCCGTCTTTAGCCTAATTGGATCAAGCTGACTCACAGAGCGTTGAACAAGATGTCGCTTGTCTCACTGCTGATAGACAAACAATTGAATTTGGTTCATAATTAAGTGCGATGCTAATTATTATATTTGAGAATATGTGAAATGAGGAAGTAACTGCATTTTTACTTCAggaaaaattattgttattaaatatttaaacgtAAATGTTATTACAGGATGacctaaaattaaaaattgtcttGAAGCATTGTGCACTATGCAAGTTTAGTGCACTATACTAAGTTTTGttctaacatttaattttgtac
>XR_004577790.1
ATCAGCAATAATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGtaTATCTCTCTCTTGGCCTGAATCACCAATTGTTCCAGTATAAAGGGAGAAAATGGTTTTACAATGTTTTCTACCTGCATCACAAGGGGATTGAGCCTCTGCACTACTGAATGACACAGCAAGCACTTTGACGTGTATTTTTCTATGAAGTCCCAACAGACACCGACCAGATCAGAGAACGGCAGCAGAAGAGCGTCTCACAGCAGACCTGCTGGGAGGAGTGAAGGATTTCAGCttggtctgaaaaaaatatcagtaacATTTCAAGAGAGATGTGCTTCTTGAATACACTGCCCCTACTGATAGTGTTCCTGCGGTTAGGTAAGCAGTTTGATGTCTTAAACTGAAACGACAACGTATGCTAAGAATCCACTTCCCTGCCAAGTTTGGCTTTTTCAGCGGCAGACTTTGAATTTGACCCTGGTTTGACCACTGGGGCAACTCTTTTTACACTGTTATTGTattagtttcattcttttcaaTGATAAATCTTTGTACTCGGCAgaatatatttcacaaactgtCACTCCTGAAAGCACCCCCATCCATGTTAAACAACCTTGTGTTCTTGggaatataatattatattaaacagtCGGGGGGGAGAGGAAATGGAAAAAGCGCTTAAGCAATGTGGAACGTCTTAAAACAGAATTGCAACACtcacaaagtaaaaaaaaaaaaagggccggTGTTTGAGACTTGACATCAAAAGTATCGTCCtcatggcaaattgctgcgACTCTAATCAGACGCAGCTGCGGCCATCTCTTCTGTTTTATCGCAACTTTATGACTTCCTAACCAATTGGTCAACAGGTGCCTGTCTTTGTAAACCCAAAGCGAGCATTCAGTAGACGCGATCACATTAAATGCCATCGCTGCTGCGCCGCACCGCcgtctctccttccttccttctttcgcCATAGTTACAATTTTGATGTTGATTTATGAAGTGTCCCACACTGAGGTCAGCGGCCTATCTGAGATTTATGAAACAGCCACTGAGAAGAGAGCGAGGCAACCCGATCTATCAGCCTTTATTATTGTTGTGACTCTGCCGTTATAACCTCCCTCACATGCTTCACTCTCAGTCAATTGAGGAGGGTTTGTTTGAAGACAGAAGGCAGATTCGGTAATCGGTACATGCGGCATACTTCAGTGAATCCGCACGGCTTCGCTCAAATATCTCGTCTTCCCGTCGTTAATGCATTACATGTCCCTTAATATGCTGAAGCAAGTGAATTTATCACTCTAATTGCTGTAGTACATCATGATCTCTTTAGGACTCTTTTAGTCTGTAGAAAGGGATATGATTACAAACAGGACCTTATTCAGGAATACATGCACGTGGGACATCTTGTGTTCCTACACCAGCAAAGCTTTTCACAAAATAACATGCACTTTAAAGCAGCATCGTACATACAGGGCATACAGTTTTGCATAAGCGAGAATGCTTGTTTGGCATAACACATTCCTCATCAAGCTTATTTGATTCACAAAGCATGAACGTGAGACATGCAGTCTTTGGTTTTACTTGCATAAGAATACTTTGTTTGGATAAAAATAATACTCACTTAAAAGCAAGATCACACAAGTAAGAATGCCTATTGGCCTAACCGAGTCATGATCAAGCTGATTTGAAATAATGCGCAGGTCACAGTTGCACAAATGCTCTTTTTGTAGCAATGGCTCTGGGTTTGTCAGTGGGCGTCTTCCTGCCCTGCCAGGTTGCAGACTCCGTTTCTGCTCCAGATTGACGAATAAAGTCATATTCTGGGTTGCGTAGGACGACTTGCTTGGCATCCAGCGCCGACGAGTGGATTAAGCGGAGGCCGTGCCATCTCTGAATGGCACCCCATTGCCATGGAGACGAGCGTCGCTCAGCATCAGCACCACGTTCCACACGTTTGACACTCGAGCTCTCAGATGGGCGTGCAGCAACGACGACAAACAGCGGCATATTTCCACCGCTACCTCACATATGTTAAATTTTCTGAAGTAAATTTGGCATGTCTAAAAACTAGgataatgatgataaatgtGACAGCCTGAAAAACTAATTACAATTGTCTCCCTGCATTCTCCAACGCACGCCTGTATGAAAAACTCATTTAAATCTTCCACAAGTCCAAAAGACAGTCTTGCTCTAAAGCCATTTGGCACACTCGCTCACCCAGTTTACATTTCCAGAGGATTAGCAGAAGAGCTTGAAATAATCATGCCAGATGTCTCCTTACACCCAGAAAAAGAGCCTGCCCATTGGGCATTtgggtttttattgtatttttttctctttttttatcacTCTTAAGTGCAAACACTTTAGAGCCCTTGGAATGCTTGGCCTCATGTCGTGATGTCATGTAAGCAAATTAAATTCCTCTCATGTCTGTCGAGTTTTATGGCATCACTATATTTAATCATTgctcctgtttgtttttttgttatagtAGCTGCCTATCGAGTAGCTGAACAGATTCTGTTGTTGGGAAATGTTTAAAACTAAACCTAATGGAACGCTTTAAAGAAATGACGTAGACCAATATGATGATGTAATTCTGTATCTCTACGTATTCAAACAGTGATAAGTCCCCCTGTGTGACGTGTATTTAAAGATATTAATATCGACAGTGTTACCTGGCAAATATAGCAACTTTTCAccatgtgtttttcttttttttttttttt
>XR_004577791.1
CAGCAATAATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGGTTTTACAATGTTTTCTACCTGCATCACAAGGGGATTGAGCCTCTGCACTACTGAATGACACAGCAAGCACTTTGACGTGTATTTTTCTATGAAGTCCCAACAGACACCGACCAGATCAGAGAACGGCAGCAGAAGAGCGTCTCACAGCAGACCTGCTGGGAGGAGTGAAGGATTTCAGCttggtctgaaaaaaatatcagtaacATTTCAAGAGAGATGTGCTTCTTGAATACACTGCCCCTACTGATAGTGTTCCTGCGGTTAGGTAAGCAGTTTGATGTCTTAAACTGAAACGACAACGTATGCTAAGAATCCACTTCCCTGCCAAGTTTGGCTTTTTCAGCGGCAGACTTTGAATTTGACCCTGGTTTGACCACTGGGGCAACTCTTTTTACACTGTTATTGTattagtttcattcttttcaaTGATAAATCTTTGTACTCGGCAgaatatatttcacaaactgtCACTCCTGAAAGCACCCCCATCCATGTTAAACAACCTTGTGTTCTTGggaatataatattatattaaacagtCGGGGGGGAGAGGAAATGGAAAAAGCGCTTAAGCAATGTGGAACGTCTTAAAACAGAATTGCAACACtcacaaagtaaaaaaaaaaaaagggccggTGTTTGAGACTTGACATCAAAAGTATCGTCCtcatggcaaattgctgcgACTCTAATCAGACGCAGCTGCGGCCATCTCTTCTGTTTTATCGCAACTTTATGACTTCCTAACCAATTGGTCAACAGGTGCCTGTCTTTGTAAACCCAAAGCGAGCATTCAGTAGACGCGATCACATTAAATGCCATCGCTGCTGCGCCGCACCGCcgtctctccttccttccttctttcgcCATAGTTACAATTTTGATGTTGATTTATGAAGTGTCCCACACTGAGGTCAGCGGCCTATCTGAGATTTATGAAACAGCCACTGAGAAGAGAGCGAGGCAACCCGATCTATCAGCCTTTATTATTGTTGTGACTCTGCCGTTATAACCTCCCTCACATGCTTCACTCTCAGTCAATTGAGGAGGGTTTGTTTGAAGACAGAAGGCAGATTCGGTAATCGGTACATGCGGCATACTTCAGTGAATCCGCACGGCTTCGCTCAAATATCTCGTCTTCCCGTCGTTAATGCATTACATGTCCCTTAATATGCTGAAGCAAGTGAATTTATCACTCTAATTGCTGTAGTACATCATGATCTCTTTAGGACTCTTTTAGTCTGTAGAAAGGGATATGATTACAAACAGGACCTTATTCAGGAATACATGCACGTGGGACATCTTGTGTTCCTACACCAGCAAAGCTTTTCACAAAATAACATGCACTTTAAAGCAGCATCGTACATACAGGGCATACAGTTTTGCATAAGCGAGAATGCTTGTTTGGCATAACACATTCCTCATCAAGCTTATTTGATTCACAAAGCATGAACGTGAGACATGCAGTCTTTGGTTTTACTTGCATAAGAATACTTTGTTTGGATAAAAATAATACTCACTTAAAAGCAAGATCACACAAGTAAGAATGCCTATTGGCCTAACCGAGTCATGATCAAGCTGATTTGAAATAATGCGCAGGTCACAGTTGCACAAATGCTCTTTTTGTAGCAATGGCTCTGGGTTTGTCAGTGGGCGTCTTCCTGCCCTGCCAGGTTGCAGACTCCGTTTCTGCTCCAGATTGACGAATAAAGTCATATTCTGGGTTGCGTAGGACGACTTGCTTGGCATCCAGCGCCGACGAGTGGATTAAGCGGAGGCCGTGCCATCTCTGAATGGCACCCCATTGCCATGGAGACGAGCGTCGCTCAGCATCAGCACCACGTTCCACACGTTTGACACTCGAGCTCTCAGATGGGCGTGCAGCAACGACGACAAACAGCGGCATATTTCCACCGCTACCTCACATATGTTAAATTTTCTGAAGTAAATTTGGCATGTCTAAAAACTAGgataatgatgataaatgtGACAGCCTGAAAAACTAATTACAATTGTCTCCCTGCATTCTCCAACGCACGCCTGTATGAAAAACTCATTTAAATCTTCCACAAGTCCAAAAGACAGTCTTGCTCTAAAGCCATTTGGCACACTCGCTCACCCAGTTTACATTTCCAGAGGATTAGCAGAAGAGCTTGAAATAATCATGCCAGATGTCTCCTTACACCCAGAAAAAGAGCCTGCCCATTGGGCATTtgggtttttattgtatttttttctctttttttatcacTCTTAAGTGCAAACACTTTAGAGCCCTTGGAATGCTTGGCCTCATGTCGTGATGTCATGTAAGCAAATTAAATTCCTCTCATGTCTGTCGAGTTTTATGGCATCACTATATTTAATCATTgctcctgtttgtttttttgttatagtAGCTGCCTATCGAGTAGCTGAACAGATTCTGTTGTTGGGAAATGTTTAAAACTAAACCTAATGGAACGCTTTAAAGAAATGACGTAGACCAATATGATGATGTAATTCTGTATCTCTACGTATTCAAACAGTGATAAGTCCCCCTGTGTGACGTGTATTTAAAGATATTAATATCGACAGTGTTACCTGGCAAATATAGCAACTTTTCAccatgtgtttttcttttttttttttttt
>XR_004577792.1
ATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGGGACCAAAAGGCCCCAGAAGGAGAGGAATATCTGACcattttgaccttgtgggaaCATGTGGCTGGTCCTCTTGAGTAAAATTGGagtttttgttggaaaagtgaAAATGACCCAaaaagatttgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttagtgcatgtgtgtttatagcCTGGGCCTTTTTTGGTTGCTCAATTTGTTGTGAAGTACCTCCGTATCCTTTAATTTTTTCAGTATATCGAAATGGCTTTTCTTCCTGATTacagttttttggttttttttttttttaacacaaacaaCCTGTTGTATATCACCACAACAAAAACTACAGTCAGACACTGTAGTATTTCCAAATATCAagtatttttaacttttaaatccTGCTCATAAT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404263.2 False 1162 lncRNA 0.41 6 30571345 30618184
XR_003404264.2 False 949 lncRNA 0.40 4 30571345 30618177
XR_004577790.1 True 3061 lncRNA 0.42 7 30593157 30618187
XR_004577791.1 False 3004 lncRNA 0.42 6 30593157 30618185
XR_004577792.1 False 770 lncRNA 0.40 4 30504336 30618177

Neighbor

gene id symbol gene type direction distance location
LOC113542134 LOC108263607 coding downstream 46216 30447258 ~ 30458120 (-)
rhd LOC108263215 coding downstream 127287 30368672 ~ 30377049 (-)
eif2ak2 NA coding downstream 152042 30345121 ~ 30352294 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 329216 30163347 ~ 30175120 (-)
LOC113542130 NA coding downstream 355412 30140946 ~ 30148924 (-)
LOC113542166 rab11fip2 coding upstream 5062 30623249 ~ 30642158 (-)
fam204a fam204a coding upstream 86827 30705014 ~ 30719700 (-)
LOC113541964 NA coding upstream 128045 30746232 ~ 30753678 (-)
trnag-gcc_2 NA coding upstream 137219 30755406 ~ 30755476 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding upstream 302718 30920905 ~ 31006462 (-)
G55400 eif3a non-coding downstream 26726 30472604 ~ 30477610 (-)
G55351 NA non-coding downstream 89867 30355571 ~ 30414469 (-)
LOC113541972 NA non-coding downstream 102940 30397412 ~ 30401396 (-)
G55349 NA non-coding downstream 116799 30347170 ~ 30387537 (-)
G55270 NA non-coding downstream 164486 30339477 ~ 30339850 (-)
G55449 NA non-coding upstream 990 30619177 ~ 30623205 (-)
trnag-gcc_3 NA non-coding upstream 233750 30851937 ~ 30852007 (-)
trnag-gcc_4 NA non-coding upstream 242249 30860436 ~ 30860506 (-)
G55992 NA non-coding upstream 704967 31323154 ~ 31323464 (-)
G56173 NA non-coding upstream 1014908 31633095 ~ 31633326 (-)
rsrp1 rsrp1 other downstream 159798 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 250880 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 343112 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 381514 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 393175 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 927714 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 945368 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 1060196 31678383 ~ 31830932 (-)
G56272 NA other upstream 1209627 31827814 ~ 31829484 (-)
G56303 NA other upstream 1218995 31837182 ~ 31838235 (-)

Expression


Co-expression Network