Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113542174 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 24777612 ~ 24780540 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_003404271.2 | True | 509 | lncRNA | 0.45 | 4 | 24777612 | 24780540 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cacul1 | cacul1 | coding | upstream | 337157 | 24416490 ~ 24440455 (+) |
| ggps1 | ggps1,LOC107728322 | coding | upstream | 432244 | 24316703 ~ 24345368 (+) |
| LOC117596572 | NA | coding | upstream | 640765 | 24133623 ~ 24136847 (+) |
| lrrfip2 | lrrfip2,LOC107679173 | coding | upstream | 778212 | 23868151 ~ 23999400 (+) |
| si:dkey-78p8.1 | NA | coding | upstream | 1326621 | 23428017 ~ 23450991 (+) |
| gpatch11 | gpatch11 | coding | downstream | 402613 | 25183153 ~ 25191848 (+) |
| tsnax | tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 | coding | downstream | 424599 | 25205139 ~ 25239169 (+) |
| LOC113541878 | NA | coding | downstream | 576849 | 25357389 ~ 25364017 (+) |
| sirt1 | sirt1 | coding | downstream | 584575 | 25365115 ~ 25386138 (+) |
| LOC113542106 | NA | coding | downstream | 669998 | 25450538 ~ 25459746 (+) |
| G52179 | NA | non-coding | upstream | 24214 | 24753166 ~ 24753398 (+) |
| G52175 | NA | non-coding | upstream | 39630 | 24736597 ~ 24737982 (+) |
| G52163 | NA | non-coding | upstream | 80715 | 24689238 ~ 24696897 (+) |
| G52161 | herc4 | non-coding | upstream | 115207 | 24661461 ~ 24662405 (+) |
| LOC117596845 | LOC107716903 | non-coding | upstream | 118520 | 24654900 ~ 24659092 (+) |
| G52187 | NA | non-coding | downstream | 828 | 24781368 ~ 24781620 (+) |
| G52188 | NA | non-coding | downstream | 1116 | 24781656 ~ 24781884 (+) |
| G52190 | NA | non-coding | downstream | 3530 | 24784070 ~ 24784294 (+) |
| G52191 | NA | non-coding | downstream | 4229 | 24784769 ~ 24784984 (+) |
| G52192 | NA | non-coding | downstream | 6022 | 24786562 ~ 24786770 (+) |
| b3galnt2 | b3galnt2 | other | upstream | 375158 | 24350184 ~ 24402454 (+) |
| LOC113540163 | NA | other | upstream | 719714 | 24055154 ~ 24057898 (+) |
| slc29a3 | slc29a3 | other | upstream | 942761 | 23793680 ~ 23834851 (+) |
| G51749 | NA | other | upstream | 1080318 | 23697032 ~ 23697294 (+) |
| G51562 | NA | other | upstream | 1322063 | 23454428 ~ 23455549 (+) |
| golga4 | golga4 | other | downstream | 781862 | 25562402 ~ 25594936 (+) |
| acoxl | acoxl | other | downstream | 1021432 | 25801972 ~ 25846903 (+) |
| bcl2l11 | bcl2l11 | other | downstream | 1070060 | 25850600 ~ 25864346 (+) |
| G53328 | NA | other | downstream | 2205438 | 26985978 ~ 26992711 (+) |
| znf451 | znf451 | other | downstream | 2417369 | 27197909 ~ 27207245 (+) |
