LOC113542178


Basic Information

Item Value
gene id LOC113542178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27055764 ~ 27056998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404272.2
CTGAGTAAATATACACTGTGCCACGAAGCTCCTGAGACGAGTCGGCTAGATCAGGAGTTCTCCATCTGATCTCTAGAGATCCACCACTTTGCACAGTTTCCAGTTTCAGATGAAATCACATTCTACTTTTTCCAACACCTGCTAAAACCTTCATGACTGTGAGGAGTGTTCTCGGggATGCGGTGGATCCCGAGCCAATCCTAGGAATACAGGGTATGAGGTGGGAATAGACCATGGAAAAAGAGGTcagttgaacacacacacacacacacacattcacacttaggggcaattaCGCATTGCAAGTCTAcctaaatgcatgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404272.2 True 326 lncRNA 0.46 3 27055764 27056998

Neighbor

gene id symbol gene type direction distance location
gfral gfral coding upstream 122014 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 132513 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 168685 26873228 ~ 26887079 (+)
mlip mlip coding upstream 190627 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 246256 26803195 ~ 26809508 (+)
bag2 bag2 coding downstream 150330 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 187953 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 217518 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 257535 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 285923 27342921 ~ 27347922 (+)
G53316 NA non-coding upstream 18956 27033849 ~ 27036808 (+)
G53363 LOC108263596 non-coding upstream 36918 27017961 ~ 27018846 (+)
G53280 NA non-coding upstream 121499 26933938 ~ 26934265 (+)
G53172 NA non-coding upstream 256246 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 502612 26552936 ~ 26553152 (+)
LOC117596898 NA non-coding downstream 1880 27058878 ~ 27068180 (+)
G53312 dst non-coding downstream 54546 27111544 ~ 27121939 (+)
G53340 NA non-coding downstream 185957 27242955 ~ 27244158 (+)
LOC117596902 NA non-coding downstream 204133 27261131 ~ 27273177 (+)
G53402 NA non-coding downstream 280049 27337047 ~ 27341096 (+)
G53328 NA other upstream 63053 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1191418 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1208861 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1460828 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2653310 24350184 ~ 24402454 (+)
znf451 znf451 other downstream 140911 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1144037 28201035 ~ 28301823 (+)
G53692 NA other downstream 1390379 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1409090 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2655260 29712258 ~ 29748505 (+)

Expression


Co-expression Network