LOC113542183


Basic Information

Item Value
gene id LOC113542183
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25910018 ~ 25910119 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404274.1
gaggaaaccagcaCGTATACTAAAATTGGAATGATACTGAGAAGAATAGCATGGCCCCTTTGCAACGATAACACGCAAAATCGTGAAAAgaaccccacacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404274.1 True 102 ncRNA 0.43 1 25910018 25910119

Neighbor

gene id symbol gene type direction distance location
lhcgr LOC108262811,LOC108430256 coding downstream 118618 25772887 ~ 25791400 (-)
mertka mertk coding downstream 139972 25750053 ~ 25770046 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding downstream 212167 25685684 ~ 25697851 (-)
msh6 msh6 coding downstream 405262 25494676 ~ 25504756 (-)
dnajc12 dnajc12 coding downstream 579816 25308306 ~ 25330202 (-)
anapc1 anapc1 coding upstream 12911 25923030 ~ 25966974 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding upstream 91311 26001430 ~ 26011780 (-)
LOC113541884 s39a9 coding upstream 156855 26066974 ~ 26073754 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding upstream 166473 26076592 ~ 26110409 (-)
LOC117596837 NA coding upstream 440010 26350129 ~ 26351151 (-)
G52771 NA non-coding downstream 43931 25865886 ~ 25866087 (-)
G52759 NA non-coding downstream 63126 25843012 ~ 25846892 (-)
G52716 NA non-coding downstream 171082 25736578 ~ 25738936 (-)
G52714 NA non-coding downstream 179148 25730445 ~ 25730870 (-)
G52564 NA non-coding downstream 234702 25675076 ~ 25675316 (-)
G52792 NA non-coding upstream 5343 25915462 ~ 25916951 (-)
G52981 NA non-coding upstream 206769 26116888 ~ 26117206 (-)
G53047 NA non-coding upstream 340236 26250355 ~ 26286280 (-)
G53046 NA non-coding upstream 343226 26253345 ~ 26288933 (-)
G53049 fgfr2 non-coding upstream 348311 26258430 ~ 26262823 (-)
herc4 herc4,LOC107689351 other downstream 1174130 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1258171 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1777535 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1869918 24016896 ~ 24040100 (-)
G51576 NA other downstream 2455801 23447908 ~ 23454217 (-)
dst dst other upstream 1147778 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1627650 27537769 ~ 27541331 (-)
G54269 NA other upstream 2523101 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3969176 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 4201712 30111831 ~ 30122822 (-)

Expression


Co-expression Network