LOC113544235


Basic Information

Item Value
gene id LOC113544235
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21893534 ~ 21899039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404488.2
TTTATGAGACTGGAGAAGAAGCTCTATGCTATGGAAATAATTCAAACAACAATACTTTTCTTTACACTGagtcttttacatttacaacgGCAATTGTTGTAAGTTACCAGTTAAATGGAGCAATGGAGGCCAGGATACAATTAACATGAGATCAGTGGAAAGCGATGTCTGTGCCGAGAAAGGAGCCGCTTTGAGCAgaacaaacattaacacactggATCTGGTTTGCTGTGGATCCAGAGGCTATCCCAGGAGCACCGGGTGCAGGGTGGGAATACACTATGGACACCAGTCACAtccatcacaggGCCCACTGTCAATGGCAAGTCAGCAGCATCCATCATCACTGTGTTCTGTCTGCACTTGTGGTGTGTCAAGAGACCATATGCCTATTTGGCTTTGGAACATGGACAAGACCAAACACACAATCATCACTACAATGCATTTCATTTAGCCAGACATTCCAGTAATGTTTCTCGTACATTAAAATTTcctttttacagttt
>XR_004577807.1
TTCGTTATAAGAGTTCATTTCAATTAGAAGGAGAATATTCAGTGTTTACTGCAGCCAAAAAGTAGCTTCAACCGAGGGTTTATTACGGACCGTCTATCTCTGCGGTATTAGCAGCTAGttgtacagatttaaaaatagtCCTCTTAGTCATTTAGTTTAAGTCCCTGGAGCAATGGAGGCCAGGATACAATTAACATGAGATCAGTGGAAAGCGATGTCTGTGCCGAGAAAGGAGCCGCTTTGAGCAgaacaaacattaacacactggATCTGGTTTGCTGTGGATCCAGAGGCTATCCCAGGAGCACCGGGTGCAGGGTGGGAATACACTATGGACACCAGTCACAtccatcacaggGCCCACTGTCAATGGCAAGTCAGCAGCATCCATCATCACTGTGTTCTGTCTGCACTTGTGGTGTGTCAAGAGACCATATGCCTATTTGGCTTTGGAACATGGACAAGACCAAACACACAATCATCACTACAATGCATTTCATTTAGCCAGACATTCCAGTAATGTTTCTCGTACATTAAAATTTcctttttacagttt
>XR_004577808.1
TTCGTTATAAGAGTTCATTTCAATTAGAAGGAGAATATTCAGTGTTTACTGCAGCCAAAAAGTAGCTTCAACCGAGGGTTTATTACGGACCGTCTATCTCTGCGGTATTAGCAGCTAGttgtacagatttaaaaatagtCCTCTTAGTCATTTAGTTTAAGTCCCTGgtgttccCTTTCTTGTATTTCTACTCCCAGCAGCCAACCATTATGGGAAAAAGGATGTATCAgatgttttaatgttacagctgtATTTCTACAAAGTCCTGGAATGGGTCATAGGGACATAAAATTGCTAGGAGCAATGGAGGCCAGGATACAATTAACATGAGATCAGTGGAAAGCGATGTCTGTGCCGAGAAAGGAGCCGCTTTGAGCAgaacaaacattaacacactggATCTGGTTTGCTGTGGATCCAGAGGCTATCCCAGGAGCACCGGGTGCAGGGTGGGAATACACTATGGACACCAGTCACAtccatcacaggGCCCACTGTCAATGGCAAGTCAGCAGCATCCATCATCACTGTGTTCTGTCTGCACTTGTGGTGTGTCAAGAGACCATATGCCTATTTGGCTTTGGAACATGGACAAGACCAAACACACAATCATCACTACAATGCATTTCATTTAGCCAGACATTCCAGTAATGTTTCTCGTACATTAAAATTTcctttttacagttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404488.2 False 506 lncRNA 0.43 4 21893534 21899039
XR_004577807.1 False 556 lncRNA 0.43 4 21893534 21896815
XR_004577808.1 True 687 lncRNA 0.43 5 21893534 21896815

Neighbor

gene id symbol gene type direction distance location
si:ch73-105b23.6 LOC108262810 coding downstream 291275 21577863 ~ 21602259 (-)
calm2a calm1,LOC102293206,LOC102778633,LOC107396020 coding downstream 319453 21569456 ~ 21574081 (-)
stpg4 NA coding downstream 325292 21562717 ~ 21568242 (-)
mcfd2 mcfd2,LOC105900047,LOC107699287 coding downstream 366757 21522208 ~ 21526777 (-)
epas1b epas1 coding downstream 509418 21348210 ~ 21384116 (-)
LOC113544981 NA coding upstream 9942 21908981 ~ 21910793 (-)
pkdcca pkdcc coding upstream 281108 22180147 ~ 22204975 (-)
ubr2 ubr2 coding upstream 367657 22266696 ~ 22299362 (-)
LOC113538327 LOC108263699,LOC108420514 coding upstream 401878 22300917 ~ 22317379 (-)
prkn park2 coding upstream 418380 22317419 ~ 22424411 (-)
G50802 NA non-coding downstream 11428 21881886 ~ 21882106 (-)
LOC117596829 NA non-coding downstream 106889 21767814 ~ 21786645 (-)
G50656 NA non-coding downstream 156140 21659658 ~ 21737394 (-)
G50647 NA non-coding downstream 282637 21606428 ~ 21610897 (-)
G50626 NA non-coding downstream 375456 21517815 ~ 21518078 (-)
LOC113544581 NA non-coding upstream 102008 22001047 ~ 22003772 (-)
G51050 NA non-coding upstream 135904 22034943 ~ 22035162 (-)
G51053 NA non-coding upstream 159114 22058153 ~ 22059321 (-)
G51058 NA non-coding upstream 208053 22107092 ~ 22192916 (-)
LOC113538981 NA non-coding upstream 254309 22153348 ~ 22164424 (-)
plekhh2 plekhh2 other downstream 248022 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 414829 21387743 ~ 21478705 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 1524089 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 1637014 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 1687941 20182053 ~ 20205593 (-)
G50837 NA other upstream 50816 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 136246 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 666732 22565771 ~ 22571868 (-)
znf318 znf318 other upstream 875316 22774355 ~ 22788804 (-)
G51576 NA other upstream 1548869 23447908 ~ 23454217 (-)

Expression


Co-expression Network