LOC113544822


Basic Information

Item Value
gene id LOC113544822
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7977141 ~ 7979763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404555.2
CTAACATTACCCAGTGACATATAGACCTATAGTCCAAAGTGAATTATCCTAATAATATCACACATTCATGCATACAGCAGTCTTGAAATCAAAATATGACTTTAACTTTATTATACATGGCTTCACTTTGAGGACACTGAGGATCTGAAGAGAAGACTGTGGTGAGTTAGCAAGCAAATGCAGGCCATCTAAGGATAAGCTTCATAAATGCACTTCTTTCCTGTCTTGTTGGTATTTTGGTTTTGGAAGGTCAGGGTTTAATTTGATATGTTTGAATGGCCCTAGTACAAATTTCAAGCAACCTATTACTGCACCATTCATTATGTGATAActtttttcatcatatttttaaacctCAGTAAATGTCTTATTCAAATATGTATTCGATTTTAATATTGAGCATGagttcataataataataataataataataataataataaagtttttaatatGCTCCCTTGCTTTAGAGTCCTTTTTCTGTTATAAAAtccaattgtgtgtgtgtgtgtgtgtgtgtgtgtgcaacatatagagcatatacacacagagaaaatgcaTATAGAAAATATTCATCTGCATGCTGATGCAAAGTATGACTGCTTCACTTCATATTTAAAGGTAGATAAACAAACAGTACTTCATGACAGATATATTAaccatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagagagagagagagacagaaggactATGATAAGATGAGAGTTGACAACCCTGCAGGACTCATATGCAGcttcagggtccctggtGCTCTAGCGGCTAAGGTTCCTGCACTCTTACCAACATGGCCCTGGTTTGAAAGGGAACCAACACAGCCACTGGGAAtacactctcagtgccagtcccaggcctggataaaatgggagagttgaatcaggaagggcatccggtgtaaaacctgtgccaaatcaatcaTGCGGActaatgatccgctgtggcaacccTTAACGGGAGCAGCCAGAAGAGTTAATGatggggttgccagattgtgctAGTTTAAAAATTCTCCAGGACAGGCAAGATCTTGTTGGATAGAAAACCTAAACAATTTCCAAAAAAAGGCCCACGTGTCTCTGATGTACAaaccatttctactgtaagGTATATGGCAAATATGTGTGAAGTACTTGTTTCCCCTTTACATGTCTCTCCTTTACAATGCTCAATTTTTCTGGGCTAGTTTtaggtcttttgtgtgtttttgagatGTGGTTAACGCTGCTGAATGATATTATCTTGAACAATGGTATGTCTAAACCTGCTTAAAAAGAGCTGCTAGAATGATGTGCTGTGCTAAAAAGGTTGTGCTGTGCTAGAATGATGTGCTGTGCTAGAATGACGGACGTTATAAAGTTTCAAATGCCTATTAcggggttactctaaaaattcactagataagTGAAGTGTGATTGCCACATGACTTAATTTTGCTTGAGGCTACGCTGTTATTAATGTCAGCCTGCCTTGATATGGTCACGAGCCGCAGTGGtcaaatattttagaaaatagaAACAAGTAAATTCGTTGGGGAAAAAATTACATCCAGTATAAGAATTAAAGATGAGAAAATATCTGAGATTAGGAATATGATTATAATTAGGATTATTGGTTTACAGGCATTGATTCAGCTGTCAGTGTCTGGTTTGAAGTTATCTTTTTCTTGCCACTTGTAagtgctttttttcttaaatgtattcattaaatttcattcagttgttca

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404555.2 True 1762 lncRNA 0.37 2 7977141 7979763

Neighbor

gene id symbol gene type direction distance location
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding downstream 67167 7907228 ~ 7909974 (-)
hmx1 LOC108262852 coding downstream 147595 7826634 ~ 7829546 (-)
hmx4 LOC108262851 coding downstream 151665 7823130 ~ 7825476 (-)
zgc:153642 NA coding downstream 261240 7702652 ~ 7715901 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 331066 7630169 ~ 7646075 (-)
LOC117596360 NA coding upstream 73731 8053494 ~ 8069324 (-)
dok7 dok7 coding upstream 103288 8083051 ~ 8123270 (-)
htt htt,LOC107679870 coding upstream 240836 8220599 ~ 8270117 (-)
trnam-cau_1 NA coding upstream 487221 8466984 ~ 8467055 (-)
trnam-cau_2 NA coding upstream 488273 8468036 ~ 8468107 (-)
G42426 NA non-coding downstream 156280 7820650 ~ 7820861 (-)
G42401 NA non-coding downstream 282648 7693214 ~ 7694493 (-)
G42400 NA non-coding downstream 286114 7690711 ~ 7691027 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding downstream 289452 7687297 ~ 7687689 (-)
G42395 NA non-coding downstream 295711 7680820 ~ 7681430 (-)
G42642 NA non-coding upstream 209972 8189735 ~ 8190276 (-)
G42650 NA non-coding upstream 224434 8204197 ~ 8204405 (-)
G42665 NA non-coding upstream 319417 8299180 ~ 8299444 (-)
G42671 NA non-coding upstream 400577 8380340 ~ 8380715 (-)
G42894 NA non-coding upstream 513305 8493068 ~ 8493304 (-)
maml3 maml3 other downstream 387478 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 772442 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2157628 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2749174 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 3070902 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 154878 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 490223 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 490595 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 503540 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 775151 8754914 ~ 8783798 (-)

Expression


Co-expression Network