LOC113545372


Basic Information

Item Value
gene id LOC113545372
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3819051 ~ 3838182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404606.2
aaaaaaaagccacaggaAGACGAAAGATAGTAGCTGGATGCCCTGAGTAAACAAACTCttactgtttacatttattccacCAAATATAAAATGGCTCCCTAATGAAATACAGAAGTCCTTACAATACAAACATGGTGTATTTGAGTTGGGCTGAAGAACAACACAGGGTTTAGAAAgctgtttactttttttatatataaatcctCAAGGTGTTTGTTGACCTACACAATTAATAATTTGCATCTTCTACAGTTTTATGTAACATATTTTTAAGTTTGTTGTCTAACAAAACTAGACAGTCTGCTTCTAGTGAGAATACATGTAGTCGTGTAAAGTACTGAAAAGTCAGCAGTAAGAAGTACTAAACCATCAGGATGATTCACCTGGGTAGAAACATTCAGGGAACTTTAATAAGAAGAAACAAGTTTTCTGCTAAAAATAGATTAGCTCTACAGATTAGCAGGAGATTAGCTTGCTTTCAGTTACTCACAGCTAACTCCTGATTGTTAGttACTCGCTGGTTCCCTTTGCGGCAAAATCCTGACTGTTAGCAAACTCCAGATTGTTGGTTCTTGCTGTTTCTCCTGATTTGTGAACATCCGGCTGAATATTTGACGTGTAGAAGCAATGATGTGATTCTAGATCTTTATCATCCATCCTAAATACTGCATCAGTAGAAGGAATGATGGCTCGAGGCCTCTTTCAGTCAACTACTAAGAACTGATAAATACTCACACGCTTGGAATCTTAAAATGCTGCTTATCAGTTGCTGAGgtgaataaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggggtaGAAATTTAACCCAGACAGGTTTACAATGACTCAGAATAGGATTTTTCTCTTTcgaaccttttttttaaaaacctattTTAGAGCAGTTTAACTGAAATGTGACATGTTTTGTGAAACTCAGAAGAACATTCACTGTGCACATTTTTTCAGTCCACCATACGCAAATTGTGAGATGATTTATTACTCGTAAAAAATGGActaacaatataaaaaagatGACATTTTAAGCAAAAAGTATTTATCAAATGTGAAAAGGAGCGTTTCAGCCCAAATCCATGCAAATATCAGCCTTAAGCACTTTTAAATCACGCACGTCTATATAAATGTCTATATTTGATTGCTCTGACTGATTTTTTGAAGGAAATTTTATCCTTTAAGCATCAAACATGAGGAGAGCTCCCACACAGGACAACATGTTTCAGCCAGCCACACTGCACTGTTACATGGGATCAAGAGAGCCATATTTTTTACTTAAGGACATCAGTGAGGCTGAGGCTGGAGTCTGGATGAAGAGGAATCTTCTTTCAATAGTAATTTCTTCTTAATTTCTATTCCCGTTATTAATATTAGAGAAGTTATCCATGCAGCCGCATGATGTCTACAGTGAGTTGGAGGCTGTTTTCAAAAACAGCGTATTCTTTAGTTCATCcctcttctttttattctttttattattttgcatgcaGTTCCAAAAAGCTTTCACTTTCCAAAATGTCCCAAAATATCACTTTCATCCTTTTGCTTTTGACCTTAATTCATATTTCAATGCTTTCTTGTTCTTTAGATTGCAGGCTGAAAACACAGAATGCCTCTGTTCTATCTTTGCTTCAAGACGAATTTGTTTCCCCCCCCTTCTCCTCTTTAGTCCTTGTCTTGTTCGTAAACCGAGCTATGAAATGTATTTACCTGCATTTAATACTCACATCACTAAAGCCGTCATTTCTTGCAACTCTccattatattttaatgaaaatccgatgatttcaaaacttttttctttgaGCTACAGTCTTGCACAAAACTTTAAAGTGTTGGGAAGATGCGGGGAAAATGCCTTCATAaagtagtaaaataaaaagtgcgCGGGGATGAAAAATAATTGCTATATTGAGCCCAAGACCATAAAACAACCAGtaagaaaaataaaccaaatcaTAATTTGCCTTAGCATTTATAACTTCACAGATTGTCTTGGATACACTGccataggttttttttttttttttttttaaacaaattgtcTGGTACGTTGTTCCAAGCTTGTTGTTGAAACAGCCCTTCTGTCTCTGCAGGAAAAATCCCAGACAGCCTTAATGatgtttttaatcataaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404606.2 True 2161 lncRNA 0.36 5 3819051 3838182

Neighbor

gene id symbol gene type direction distance location
cep44 cep44 coding downstream 119531 3683443 ~ 3699520 (-)
wdr17 wdr17 coding downstream 385922 3331968 ~ 3433129 (-)
spcs3 spcs3,LOC106602378 coding downstream 525172 3288730 ~ 3293879 (-)
irf2a LOC108263359,LOC108434128 coding downstream 1675885 2126818 ~ 2143166 (-)
sod3b sod3 coding downstream 1807359 2007909 ~ 2011692 (-)
galnt7 galnt7 coding upstream 5297 3843479 ~ 3869764 (-)
galntl6 galntl6,si:ch211-15e22.3,LOC107670789 coding upstream 39008 3877190 ~ 4089518 (-)
LOC113542265 NA coding upstream 391640 4229822 ~ 4248823 (-)
LOC113542293 NA coding upstream 421549 4259731 ~ 4274167 (-)
LOC117596921 NA coding upstream 446193 4284375 ~ 4289439 (-)
G40323 NA non-coding downstream 106218 3702221 ~ 3712833 (-)
G40316 NA non-coding downstream 145240 3673150 ~ 3673811 (-)
G40315 NA non-coding downstream 146998 3668847 ~ 3672053 (-)
G40278 NA non-coding downstream 178671 3639764 ~ 3640380 (-)
G40250 NA non-coding downstream 235943 3493665 ~ 3583108 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding upstream 636 3838818 ~ 3840942 (-)
LOC117596430 NA non-coding upstream 650364 4488546 ~ 4496696 (-)
G40770 NA non-coding upstream 699877 4538059 ~ 4539526 (-)
G40936 NA non-coding upstream 827340 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 829024 4667206 ~ 4668993 (-)
trnah-gug_3 NA other downstream 784498 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 785114 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 786248 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 834848 2220147 ~ 2984203 (-)
G39720 NA other downstream 1645300 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 706957 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 1055720 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 1365524 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1917835 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 3323292 7161474 ~ 7204699 (-)

Expression


Co-expression Network