Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596430 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 4488546 ~ 4496696 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577552.1 | True | 269 | lncRNA | 0.39 | 3 | 4488546 | 4496696 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sparcl1 | LOC108262882 | coding | downstream | 15248 | 4463696 ~ 4473298 (-) |
| LOC113542300 | NA | coding | downstream | 192417 | 4293496 ~ 4296129 (-) |
| LOC117596921 | NA | coding | downstream | 199107 | 4284375 ~ 4289439 (-) |
| LOC113542293 | NA | coding | downstream | 214379 | 4259731 ~ 4274167 (-) |
| LOC113542265 | NA | coding | downstream | 239723 | 4229822 ~ 4248823 (-) |
| fam193a | fam193a,LOC103156485 | coding | upstream | 15005 | 4511701 ~ 4540623 (-) |
| arhgap10 | arhgap10,LOC107742542 | coding | upstream | 289077 | 4785773 ~ 4878809 (-) |
| ednraa | ednra | coding | upstream | 425092 | 4921788 ~ 4944595 (-) |
| pou4f2 | pou4f2 | coding | upstream | 581664 | 5078360 ~ 5081554 (-) |
| zgc:152968 | LOC108262836 | coding | upstream | 860845 | 5357541 ~ 5384816 (-) |
| G40522 | NA | non-coding | downstream | 647386 | 3792229 ~ 3841160 (-) |
| G40521 | hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 | non-coding | downstream | 647604 | 3838818 ~ 3840942 (-) |
| LOC113545372 | NA | non-coding | downstream | 650364 | 3819051 ~ 3838182 (-) |
| G40323 | NA | non-coding | downstream | 775713 | 3702221 ~ 3712833 (-) |
| G40316 | NA | non-coding | downstream | 814735 | 3673150 ~ 3673811 (-) |
| G40770 | NA | non-coding | upstream | 41363 | 4538059 ~ 4539526 (-) |
| G40936 | NA | non-coding | upstream | 168826 | 4665522 ~ 4665725 (-) |
| G40938 | nr3c2 | non-coding | upstream | 170510 | 4667206 ~ 4668993 (-) |
| G40962 | nr3c2,LOC107550687,LOC107742541,LOC107670737 | non-coding | upstream | 242688 | 4739384 ~ 4739711 (-) |
| G40966 | NA | non-coding | upstream | 247031 | 4743727 ~ 4744074 (-) |
| trnah-gug_3 | NA | other | downstream | 1453993 | 3034482 ~ 3034553 (-) |
| trnah-gug_2 | NA | other | downstream | 1454609 | 3033866 ~ 3033937 (-) |
| trnae-uuc | NA | other | downstream | 1455743 | 3032732 ~ 3032803 (-) |
| tenm3 | tenm3,LOC108434131 | other | downstream | 1504343 | 2220147 ~ 2984203 (-) |
| G39720 | NA | other | downstream | 2314795 | 2173358 ~ 2173751 (-) |
| dclk2a | LOC108263760,LOC108429594 | other | upstream | 48443 | 4545139 ~ 4609450 (-) |
| tmem184c | tmem184c,LOC107742544,LOC107670728,LOC107654969 | other | upstream | 397206 | 4893902 ~ 4906239 (-) |
| lsm6 | lsm6 | other | upstream | 707010 | 5203706 ~ 5227967 (-) |
| gab1 | gab1 | other | upstream | 1259321 | 5756017 ~ 5819513 (-) |
| lef1 | lef1,LOC103361279 | other | upstream | 2664778 | 7161474 ~ 7204699 (-) |
