LOC113541894 (wdr92)


Basic Information

Item Value
gene id LOC113541894
gene name wdr92
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27348910 ~ 27355673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577721.1
ttgggaacctgtgcttTATCCTGTCAGTGGAAACACCGTAGGACCACTACTTTCCAGATATTATTTTCTTGTCTCACTGTTGTGTGtaacattgtttttaaatacttaaatgcCACTGCAGGATTTATAACAGATCACCGAATGAAAGTACAAACTGACACTGGTGACACTGGTGACACTGGTGACCCTCCAGCTGTACAGCTATAAGGTAGACCTACAAGATTTATATTATGCTGTAGGCATGGTGAGTTCTGACTGTTGCACAGTGACAGTGCAGCCCCAAGTGCCAGACCTGAACATGAAAGCGGTGATGAATGAGATGTACAGCTCAGATGCTGTGTTTCTGAATGCTGGAGACAAGCAGTAACTGTAACAGTTTTGTCACCAGATCGCATAAATTCTCAAATCTGTTCCAGTTTACCATGTTCCACTGAGGTGAAGGGTGTCTGGCTGTCCAAAACGGCTAGAATGGACAGTAAGGCTGGAGTTTCTGTTAAGGAATGTTCACACCACAGAGCCTGCCCTTCAGAAATATCTGGATGCCTGGTCTTTGAGTCCAGACAACTGGGAACTCAAGTTGCACGTGGATCTTCTGCTGCTTTTACAGGAGAAGAGCAGCACCTGCAGACTGCACTAGCCCTCAAACCCTCCCACTCAGGCCTTAGGTCATAACTGCATGTTTTATAGAAATTATTTTGGGGTATGAATTTAGAGTAGAAGTTCTTAACTCCAGTGCTGGAGGCCAACTGCACTGTTTCAGGCTTTTCCTGCTCCCAGCACACCTGATAATTAATTTGTGAGCTGGATATGTTTAACTGGGAGTAGGATTCAGGGAAGACTGCAGGGAAGGGGGATTATTTTCAGTAGAGTAATTGAGGTCCATGTTAATATTAATTGTGTGCTGGCCTGGGAAAACACTTGACATCATgcaattttgatattttatatatagttctgaaagcTGAACTATATTTGAGCTGAAACATGTTTCTCATTTGCTCAGATCTCAACCACAGTAAGCACAGCAAGTGACAACgcagaaaattgcatttaaaaaaaatccattctgGCTGTGGCAtaggagcatcacagacattttgacagccagtatcAGACTACAAACTCATTTGATTaggtttatttccatttttacaaTGATGTTTGAATAACTTGATCAAAGCTTGGCTTTCACTACCTGAGGAAATGACATGTAGCTAGCaaagttttagacatctttaggcagattGACTGCATTTACCACCATGTTTGTTCAACTGACTCCTTATCCAACGTGAGCTTTGAAAGAAGATAAACAAGGAAAGactgaaaaTGTGCTGCAGATTCTAGATCCAAGAATCACCATCTAGCTGTATTATGATGGGTTCTGCACAGATTTGGTTTTGCTGCAGCAGGATGGAACTCagtggaaaaagagaaaggaacgACTCTGTTCCTCCAGCAAGGCCTGGAGTATGTTACGGGCCAGTTCTTTAACTCACATGGCCAAGACTGcagagagcagaaaCCTGATCCTGGATATTCTCTGTCGATTGTAAATGCCCAGTTTTTAAGAGGGGGTCTCAGTCTGGGAGCCTTGCTGTCCAAACACACAACCTTGGGGCAAATGATGAGCCCAATGCTGGTTTATCAGAATGTTGCTGCAATGGCTGTGCaagctctgagtgtgtgtgttggtcaggGCCATGTGACTCAGCAGTTAGGATGCCCACTTTGCTTCACTTAAAGTTCTCATTGAGCAGCAGAACATAACCAAGCAAGCCTGGATGACCAAGAGGTGCCAAGCTCTCTCTGTTCTCCTATGGCTCTCCTGCATCGACACCTGCAGGGAACTCCTGGACCTGCAGTTAAAGgtgtgtgagtTGGGAGTCATGAACACACCCTGGAGCTAGCCCAATGTAACAGTGACGCTGGATCAGAAACGGGTCAAGCGGCCTTGGCCAATGCCTGCCTCAGTTTCCAGGCTAGCATCATGTTGGAGGGATTGCCACTGACTGGAGATCCTCCTGAACAACTGACCAAACAGAAGTGTTGGCAGGAGCACTTGGctaaagagaaggagaaaacagaaaagcaattCTGCATTAAGGAAGTGAAAGTGAGGGGGTCATTTGGGCGCACTGGGACTGGAAGAGGGATTGGAAAAGGAGCTCCAGCCCAAGGGGAAACTATAGCCACAGCTAAAACATCTGCTCCAATTCAAGGGGTCAAAACCTTTCCAGGAGTAGCAAGGAGTGGCTGCGGTTAGGAGGGATGGAAAGAGTGCAGAACCAAAACCAAGCCTCAATGCCCAGCTTTCTCCCAGCAAGTCCAAACAGGAGTGCAGCATGCAACACACTAAACCAGCAGCGCCTTTGGAGGAGGAGCGTAAGATCAGTGGTGCCACCACTCCAGCAGCTCTAAACCTGAAGTTTCATGCTCCTCGGCAAGGATTAGCCAGAGCCTTGGCATGTTCTCCAAACTCCCACCAGCAGGCCTGCTCTCTCTACCAAGAGATTATCCCCATGTCTGCACAGGTTAGATTCTCCTTTTCTGCACTTAGACATTCATTTCGTAAAGCTGGTGCTCGTTTTGGTTTGTGTGGATGTATTTCAGGTTCATGATGCATACACTGAGCTAGCAAACCTACTGGTGGAAAGTAGGTTCATGAGCCACTGTAGATGTTTACAGCAGGTTTCCTTTAAAGCCTGTTAATGAACAGACTTTTGATGATGCCTTCATCACAGAAGCAACTTTTCACCTCTTCATGACCGTCCTCAGCTGGCTCCTAATCTGACTGCATATGGAAAAGTCATGGGGCTCAaaaaaagtaCTTTGATATACTGCATGGGAAGTTTATGACCAAGCTGCTAAAAACTATTTATGCAGGAATTCATAACAAATCAGTGGAGGATGAAGATCAAGTAATGCTGGATATGAATGGCTTCCGGCTTTCATTTTATAGGTTCATTTCCCTTTCCATTATTATGGATTTGGtagttagttaattagttaactAAACACATCTGCAAGCAAAGAAATTgcataaatgaaaagaaatttaaaatgacaaaattatcGGATTGCAAAATGGTTTACTGTGTAAAACATTTCATATTCAAAAACAATGGCACAACTCCTTTTAGAAGAAGACTTCAGTTCATATCATTTTCACTCTAAATGAAGTTAGAGTAGTCGTGTTTGTTTGCATATAAGCAGGTTCACATTTGGTTTGTAGAGCAAACACATTAGCTTGGAATAATATTAAGGCCCGGAGTCACACGGGAGCTCATACTCTATTCAGCTTGGTGACGATGAGGACTCTTACAGACTGGTCAaaggaagcacacacacacaggccctgCTTGTCGGGACTCCAGTCCAGGCTGGCGATGGGTTGTGAAGACAGAGTGACGTTTTGCAGGAGATTGAGTGTGCCAGCCACTCCTCTGGCCACTCCCTCTCCATCTTGCTCACTCCTCTTCTCGGGATACTCACTGTAATAAGCCAGAATTGTCAATACAGATCAGTGGTGCTTAGTGCTGAGATGATATAGTATTGATATTGTGACAAATTATGGATTACAgattacacttttctgagatgtaTGTATTGtcagcatttttatattataagtTTTTCAAAGGCAGCACTACTGTtctgctggcagtttgttagcaaatcTATATATGGTGTTACAAATTGTGTATCCTCCTCCACTAGCTGAATTAAAAACtacacttcaacaca

Function

symbol description
wdr92 Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within apoptotic process. Predicted to be located in cytoplasm. Orthologous to human DNAAF10 (dynein axonemal assembly factor 10).

NR:

description
PREDICTED: WD repeat-containing protein 92

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577721.1 True 3747 lncRNA 0.44 12 27348910 27355673

Neighbor

gene id symbol gene type direction distance location
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding upstream 988 27342921 ~ 27347922 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding upstream 21255 27314533 ~ 27327655 (+)
olig3 olig3 coding upstream 72581 27274516 ~ 27276329 (+)
si:ch73-52p7.1 LOC108262847 coding upstream 91031 27244951 ~ 27257879 (+)
bag2 bag2 coding upstream 135788 27207328 ~ 27213122 (+)
pno1 pno1,LOC107719218 coding downstream 5169 27360842 ~ 27365471 (+)
plek plek,LOC107720939,LOC107558215,LOC107727890,LOC107561985 coding downstream 30584 27386257 ~ 27393196 (+)
LOC113542114 bfsp1 coding downstream 70169 27425842 ~ 27435989 (+)
gtpbp2a gtpbp2,LOC108263131,LOC107751133 coding downstream 151562 27507235 ~ 27517687 (+)
gsta.1 gsta3,LOC108425408,LOC108425446 coding downstream 177046 27532719 ~ 27537671 (+)
G53402 NA non-coding upstream 7814 27337047 ~ 27341096 (+)
LOC117596902 NA non-coding upstream 75733 27261131 ~ 27273177 (+)
G53340 NA non-coding upstream 104752 27242955 ~ 27244158 (+)
G53312 dst non-coding upstream 226971 27111544 ~ 27121939 (+)
LOC117596898 NA non-coding upstream 280730 27058878 ~ 27068180 (+)
LOC113542161 NA non-coding downstream 172192 27527865 ~ 27530466 (+)
G53331 NA non-coding downstream 204499 27560172 ~ 27562940 (+)
G53614 NA non-coding downstream 708970 28064643 ~ 28067481 (+)
G53616 NA non-coding downstream 744940 28100613 ~ 28100831 (+)
G53665 NA non-coding downstream 912048 28267721 ~ 28267965 (+)
znf451 znf451 other upstream 141665 27197909 ~ 27207245 (+)
G53328 NA other upstream 356199 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1484564 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1502007 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1753974 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 845362 28201035 ~ 28301823 (+)
G53692 NA other downstream 1091704 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1110415 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2356585 29712258 ~ 29748505 (+)
G55091 NA other downstream 2581875 29937548 ~ 29941181 (+)

Expression


Co-expression Network