LOC117596795


Basic Information

Item Value
gene id LOC117596795
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6239367 ~ 6262431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577767.1
GCAGTTAACAGTATTCATTCTCTCTGTCAGCTCACACTGTTCATCATGAAGTACTTTGAGAGGCTAGTCCTGAAGCAATAAAGACAAAACTCCACTTCCCTGGACCAAGTGCTGTATGTTTATTGCCCCAAGAGGTATAGGGGTGATGACATTACTACCTCATAGGGAAGCATAACCTGAACACTGCAtatgcaactggatcctggatttGCACAAAGCCACTGCGGACATAACAAAATTTCAGGGGTACGTGCAGTGAACTATTTCCACTCCTCCATTATGGAAGTTTCCTGGTGCACACATTGCACCATCTACACAGATAAGAAGCCCAGCAGAAGAGAACACCTCCTCTCCAATCCCACGTGCATTGCATACAGCAGGAGGATTACAGTTGTTCCAGCTGAACTCCCGTGATAGTCATAATGAATCATCAGTCATGGGGTTCCTCACGTGGCTTCTTAGAGGAAAATCCACACTCAGTTTTGGAGGATGGAGTTGAACATGGTGCAAAACCCCCCCTGACTTTTCTACAGACAGCATCCTCAATCCATGGAAGGAAGGGCACTGAGATATAAGcagacatgagcttccatgctgcgctctcagttccagaatcaGTGATTTCAGCTGAGCTACACCAACATCCACAGGAGTGCTGTTTAAGATTTTCCTACATTTCTTAGTGTAATATCATGCACAAGTTTATTATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577767.1 True 711 lncRNA 0.45 3 6239367 6262431

Neighbor

gene id symbol gene type direction distance location
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 382137 5843566 ~ 5857230 (+)
LOC113542482 NA coding upstream 488335 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 509705 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 523329 5697206 ~ 5716038 (+)
LOC113544150 NA coding upstream 549405 5677180 ~ 5689962 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 3499 6265930 ~ 6295477 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 64429 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 113138 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 136463 6398894 ~ 6405603 (+)
zgc:154142 LOC108262754 coding downstream 155831 6418262 ~ 6463985 (+)
G41299 NA non-coding upstream 362945 5876148 ~ 5876422 (+)
G41232 NA non-coding upstream 419920 5818548 ~ 5819447 (+)
G41049 NA non-coding upstream 903802 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 916976 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 931249 5258551 ~ 5308118 (+)
G41345 NA non-coding downstream 41466 6303897 ~ 6304105 (+)
G41600 NA non-coding downstream 256628 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 322424 6584855 ~ 6585448 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding downstream 336272 6598703 ~ 6598967 (+)
G41654 NA non-coding downstream 339481 6601912 ~ 6602163 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 10682 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 881507 5263582 ~ 5357860 (+)
G41047 NA other upstream 897617 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1467763 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2404741 3831867 ~ 3834626 (+)
G42075 NA other downstream 941519 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1358114 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1386767 7649198 ~ 7671410 (+)
G42685 NA other downstream 2203316 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 2207193 8469624 ~ 8469881 (+)

Expression


Co-expression Network