Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596827 |
| gene name | LOC108261757,LOC108263779,LOC108261164 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 234969 ~ 236237 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: cell wall protein DAN4-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577800.1 | True | 346 | lncRNA | 0.48 | 4 | 234969 | 236237 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cdkn2a/b | LOC108263810 | coding | upstream | 510101 | 746338 ~ 755807 (-) |
| cxxc4 | cxxc4 | coding | upstream | 602274 | 838511 ~ 871353 (-) |
| ppa2 | ppa2,LOC108414713 | coding | upstream | 689714 | 925951 ~ 937449 (-) |
| ints12 | ints12 | coding | upstream | 829150 | 1065387 ~ 1069815 (-) |
| anp32b | anp32b | coding | upstream | 909892 | 1146129 ~ 1153350 (-) |
| G38277 | NA | non-coding | downstream | 122918 | 111818 ~ 112051 (-) |
| G38275 | NA | non-coding | downstream | 124870 | 109853 ~ 110099 (-) |
| G38273 | NA | non-coding | downstream | 125964 | 108773 ~ 109005 (-) |
| G38240 | LOC108263783 | non-coding | downstream | 177211 | 56882 ~ 57758 (-) |
| G38393 | NA | non-coding | upstream | 33049 | 269286 ~ 273434 (-) |
| G38401 | NA | non-coding | upstream | 83590 | 319827 ~ 320131 (-) |
| G38402 | NA | non-coding | upstream | 90445 | 326682 ~ 326986 (-) |
| G38404 | NA | non-coding | upstream | 106594 | 342831 ~ 343055 (-) |
| G38405 | NA | non-coding | upstream | 107124 | 343361 ~ 343651 (-) |
| G38400 | NA | other | upstream | 78744 | 314981 ~ 315528 (-) |
| LOC113524614 | NA | other | upstream | 768240 | 1004477 ~ 1007050 (-) |
| cntln | cntln,LOC108263774 | other | upstream | 1034208 | 1270445 ~ 1369012 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | upstream | 1635696 | 1871933 ~ 1877583 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | upstream | 1733526 | 1969763 ~ 1979549 (-) |
