LOC117596830


Basic Information

Item Value
gene id LOC117596830
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 690885 ~ 693150 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577806.1
TCACGTCAGGCTGGTTTTCAACGACTCCAGTCCTGTTCCCAGTGCTATTGCAGCTCTTCTGATTTCTACACCTGTAAACCTCACTGAGACTGTAACAGTGCAGAACTGCACCTATGACAAAATTTCAAACACCTCCTATGCAGTTAacattacattcagcatcagcAACGTCAGCATTCCCAAGAACCCTAACCTCAGGAACGACACCTACACCCAAGTGCAGAGCATCATCAATAACGCTGTAAACGCACTTCTAAATAAATCTGGTGCAGATCCAGTTGAACCCACTACCTCCAACTTCACGAGTTCAAAGGATCAAGTTAATGGTTACATGGAATACAATTTACTAAACGTCATCAATCAGCCTGTCAATGACACATCTGCAAAGGTTAATCCAACTACGACTCGGTGCAGACTTCTCCAGGATCTCCGTCCACAACCAATGGATCAGCAGTGGTCTACGTCAGGCTGGTTTTCAACGACTCCAGTCCTGTTCCCAGTGCTATTGCAGCTCTTCTGATTTCTACACCTGTAAACCTCACTGAGACTGTAACAGTGCAGAACTGCACCTATGACAAAATTTCAAACACCTCCTATGCAGTTAacattacattcagcatcagcAACGTCAGCATTCCCAAGAACCCTAACCTCAGGAACGACACCTACACCCAAGTGCAGAGCATCATCAATAACGCTGTAAATGCACTTCTAAATAAATCTGGTGCAGATCCAGTTGAACCCACTACCTCCAACTTCACGAGTTCAAAGGATCAAGTTAATGGTTACATGGAATACAATTTACTAAACGTCATCAATCAGCCTGTCAATGACACATCTGCAAAGGTTAATCCAACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577806.1 True 860 lncRNA 0.44 10 690885 693150

Neighbor

gene id symbol gene type direction distance location
LOC117596906 NA coding upstream 1382 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 2099 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 58355 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 226826 450594 ~ 464059 (+)
LOC117596915 NA coding upstream 263995 418514 ~ 426890 (+)
LOC113525488 NA coding downstream 5027 698177 ~ 702567 (+)
LOC117596917 NA coding downstream 292398 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 324244 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 345525 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 379587 1072737 ~ 1094921 (+)
LOC117596828 NA non-coding upstream 66487 623355 ~ 624398 (+)
G38324 NA non-coding upstream 350988 338816 ~ 339897 (+)
G38323 NA non-coding upstream 370865 319816 ~ 320020 (+)
G38322 NA non-coding upstream 375214 315329 ~ 315671 (+)
G38317 NA non-coding upstream 415836 269320 ~ 275049 (+)
G38481 NA non-coding downstream 17185 710335 ~ 710574 (+)
G38484 NA non-coding downstream 33488 726638 ~ 727365 (+)
G38489 NA non-coding downstream 47367 740517 ~ 741198 (+)
G38503 NA non-coding downstream 82886 776036 ~ 776249 (+)
G38514 NA non-coding downstream 129124 822274 ~ 822824 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 477156 200601 ~ 213729 (+)
mtap mtap,LOC108263789 other downstream 28977 722127 ~ 744999 (+)
G38577 NA other downstream 370822 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 409628 1102778 ~ 1141934 (+)
trmo trmo other downstream 472695 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 501069 1194219 ~ 1224601 (+)

Expression


Co-expression Network