LOC117596835


Basic Information

Item Value
gene id LOC117596835
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15619605 ~ 15673458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577817.1
GtggattgtttaaaaatgtatgacatcacttcctgttaaaAGTAAACACGCGCTCGTGCTGCAGAACTGTATATTACTGGGAAAAGAGGTCTGTCCCAGTGAGCAGTCATTAaagaactgtgtgtgtctgggctTTGAGGATTGAGCAGGAGCTGCATGTGATTCTGGATGATGGGAAATCTTTAGGTATCAGTAACAGgGGTTGTACCTGCTATAATAGGCTGGCTTGCGTACTGGCCGTAGCTGGGGCCATGGTGGCCATAGGCACC

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577817.1 True 269 lncRNA 0.47 3 15619605 15673458

Neighbor

gene id symbol gene type direction distance location
LOC113544434 LOC108262902,LOC108442942 coding downstream 145664 15457511 ~ 15473941 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding downstream 174090 15436535 ~ 15445515 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding downstream 187842 15429014 ~ 15431763 (-)
chata chat coding downstream 191365 15418742 ~ 15428240 (-)
LOC113544576 hps6 coding downstream 535276 15079023 ~ 15084329 (-)
hif1an hif1an,LOC107707391 coding upstream 7263 15680721 ~ 15696855 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding upstream 29701 15703159 ~ 15708376 (-)
scdb scd coding upstream 37672 15711130 ~ 15718040 (-)
trmt2b trmt2b coding upstream 47823 15721281 ~ 15722878 (-)
LOC113544455 LOC108263660 coding upstream 58001 15731459 ~ 15732753 (-)
G47114 LOC101463634 non-coding downstream 20399 15596729 ~ 15599206 (-)
LOC113538630 NA non-coding downstream 28414 15584165 ~ 15591191 (-)
G46869 NA non-coding downstream 465909 15106917 ~ 15153696 (-)
G46754 NA non-coding downstream 553606 15064518 ~ 15065999 (-)
G46750 NA non-coding downstream 558432 15060856 ~ 15061173 (-)
G47130 NA non-coding upstream 23620 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 60375 15733833 ~ 15734079 (-)
G47160 NA non-coding upstream 71082 15744540 ~ 15746774 (-)
G47213 NA non-coding upstream 338112 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 597812 16271270 ~ 16272531 (-)
c3h10orf53 NA other downstream 203122 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 834852 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1427362 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2184119 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2588409 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 771238 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1305673 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1797729 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1887946 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1904720 17578178 ~ 17661419 (-)

Expression


Co-expression Network